Sporisorium scitamineum
TaxID: 49012
Basic Information
Sporisorium scitamineum
Smut of Sugarcane
Sugarcane smut is a fungal disease of sugarcane caused by the fungus Sporisorium scitamineum. The disease is known as culmicolous, which describes the outgrowth of fungus of the stalk on the cane. It attacks several sugarcane species and has been reported to occur on a few other grass species as well, but not to a critical amount. The most recognizable characteristic of this disease is a black or gray growth that is referred to as a "smut whip". Resistance to sugarcane smut is the best course of action for management, but also the use of disease free seed is important. On smaller scale operations treatments using hot water and removing infected plants can be effective. The main mode of spore dispersal is the wind but the disease also spreads through the use of infected cuttings. Sugarcane smut is a devastating disease in sugarcane growing areas globally.
from Wikipedia
Taxonomic Information
Eukaryota
Basidiomycota
Ustilaginomycetes
Ustilaginales
Ustilaginaceae
Sporisorium
scitamineum
Undefined
Species
nan
d__Eukaryota;p__Basidiomycota;c__Ustilaginomycetes;o__Ustilaginales;f__Ustilaginaceae;g__Sporisorium;s__Sporisorium scitamineum
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (1 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Saccharum officinarum | Host |
Quarantine Status (9 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Bahrain | A1 list | 2003 |
| Egypt | Regulated non-quarantine pest | 2018 |
| Morocco | Quarantine pest | 2018 |
| Mexico | Quarantine pests | 2018 |
| Malaysia | Quarantine pests | — |
| New Caledonia | Quarantine pests | — |
| Oman | Absent | — |
| Papua New Guinea | Present | — |
| Qatar | Absent | — |
Distribution (77 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Afghanistan | Present | — |
| Argentina | Present | — |
| Australia | Present | |
| Benin | Present | — |
| Burkina Faso | Present | — |
| Bangladesh | Present | — |
| Belize | Present | — |
| Bolivia (Plurinational State of) | Present | — |
| Brazil | Present | |
| Barbados | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000772675.1 | Scaffold | 19 | 129 | 823 | - |
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Sporisorium_scitamineum_v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR34729205 | - | - | - | 32624586 | China:Guangdong | |
|
PRJNA1297359 SRX29863572 SRP603839 fungi RNA-Seq of Sporisorium scitamineum: haploid cells Total RNA was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext Ultra RNA Library Prep Kit for Illumina (NEB, USA, Catalog #: E7530L) following manufacturers recommendations and index codes were added to attribute sequences to each sample.The qualified libraries were pooled and sequenced on Illumina platforms with PE150 strategy in Novogene Bioinformatics Technology Co., Ltd (Beijing, China), according to effective library concentration and data amount required. {'host': 'sugarcane', 'sample_type': 'cell culture', 'geo_loc_name': 'China:Guangdong', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2023-11-22', 'isolation_source': 'wt17-1 MAT-1 (wild-type)'} |
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| SRR34729204 | - | - | - | 31012762 | China:Guangdong | |
|
PRJNA1297359 SRX29863573 SRP603839 fungi RNA-Seq of Sporisorium scitamineum: haploid cells Total RNA was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext Ultra RNA Library Prep Kit for Illumina (NEB, USA, Catalog #: E7530L) following manufacturers recommendations and index codes were added to attribute sequences to each sample.The qualified libraries were pooled and sequenced on Illumina platforms with PE150 strategy in Novogene Bioinformatics Technology Co., Ltd (Beijing, China), according to effective library concentration and data amount required. {'host': 'sugarcane', 'sample_type': 'cell culture', 'geo_loc_name': 'China:Guangdong', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2023-11-22', 'isolation_source': 'wt17-2 MAT-1 (wild-type)'} |
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| SRR34729203 | - | - | - | 25161072 | China:Guangdong | |
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PRJNA1297359 SRX29863574 SRP603839 fungi RNA-Seq of Sporisorium scitamineum: haploid cells Total RNA was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext Ultra RNA Library Prep Kit for Illumina (NEB, USA, Catalog #: E7530L) following manufacturers recommendations and index codes were added to attribute sequences to each sample.The qualified libraries were pooled and sequenced on Illumina platforms with PE150 strategy in Novogene Bioinformatics Technology Co., Ltd (Beijing, China), according to effective library concentration and data amount required. {'host': 'sugarcane', 'sample_type': 'cell culture', 'geo_loc_name': 'China:Guangdong', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2023-11-22', 'isolation_source': 'wt17-3 MAT-1 (wild-type)'} |
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Literature
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