Fusarium xylarioides
TaxID: 221167
Basic Information
Fusarium xylarioides
Wilt of Coffee
Gibberella xylarioides (Fusarium xylarioides) is a species of fungus in the family Nectriaceae. It is the causative agent of coffee wilt disease (CWD). The disease caused a severe problem in several countries in West and East Africa during the 1940s and 1950s. CWD was first seen in Coffea liberica.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Hypocreales
Nectriaceae
Fusarium
xylarioides
Undefined
Species
nan
d__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__Fusarium xylarioides
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (2 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Coffea arabica | Host |
| Coffea canephora | Host |
Quarantine Status (13 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Brazil | A1 list | 2018 |
| Ecuador | Quarantine pests | — |
| Greece | Quarantine pests | — |
| Indonesia | Absent | — |
| India | Quarantine pests | — |
| Sri Lanka | Quarantine pests | — |
| Malaysia | Quarantine pests | — |
| New Caledonia | Quarantine pests | — |
| Nepal | Quarantine pests | — |
| Peru | Absent | — |
Distribution (26 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Angola | Absent, pest no longer present | — |
| Burkina Faso | Absent | — |
| Central African Republic | Absent | — |
| Côte d'Ivoire | Absent | — |
| Cameroon | Absent | — |
| Democratic Republic of the Congo | Absent | — |
| Democratic Republic of the Congo | Present | — |
| Ethiopia | Present | — |
| Gabon | Absent | — |
| Ghana | Absent | — |
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_004329255.1 | Scaffold | 55 | 136 | 138 | - |
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XCEL_Fxyl_2.0 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR28051651 | - | - | - | 170473002 | Ethiopia | |
|
PRJNA1043203 SRX23701399 SRP491020 fungi RNA-seq of Fusarium xylarioides IMI375908 in culture Strain morphologies were verified and grown in GYM broth for 7 days at 25oC and 175 RPM. Mycelia were harvested and total RNA extracted using the standard protocol of the RNeasy Mini kit (Qiagen, Hilden, Germany). The RNA quality assessment (Qubit and Fragment Analyzer), library preparation and Next Generation Sequencing (60M paired-end reads per sample) were performed by Genewiz/ Azenta (Frankfurt, Germany). Fastq files were quality-trimmed using trimmomatic parameters "ILLUMINACLIP:$TRIMMOMATIC_DIR/adapters/TruSeq3-PE.fa:2:30:10 SLIDINGWINDOW:4:5 LEADING:5 TRAILING:5 MINLEN:25". IMI375908_culture_2 {'strain': 'IMI 375908', 'isolate': 'IMI375908_culture_2', 'geo_loc_name': 'Ethiopia', 'biosamplemodel': 'MIGS.eu', 'collection_date': '2022', 'isol_growth_condt': 'https://www.cabi.org/products-and-services/bioscience-services/microorganism-supply-services/'} |
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| SRR28051649 | - | - | - | 141667015 | Ethiopia | |
|
PRJNA1043203 SRX23701400 SRP491020 fungi RNA-seq of Fusarium xylarioides IMI375908 in culture Strain morphologies were verified and grown in GYM broth for 7 days at 25oC and 175 RPM. Mycelia were harvested and total RNA extracted using the standard protocol of the RNeasy Mini kit (Qiagen, Hilden, Germany). The RNA quality assessment (Qubit and Fragment Analyzer), library preparation and Next Generation Sequencing (60M paired-end reads per sample) were performed by Genewiz/ Azenta (Frankfurt, Germany). Fastq files were quality-trimmed using trimmomatic parameters "ILLUMINACLIP:$TRIMMOMATIC_DIR/adapters/TruSeq3-PE.fa:2:30:10 SLIDINGWINDOW:4:5 LEADING:5 TRAILING:5 MINLEN:25". IMI375908_culture_3 {'strain': 'IMI 375908', 'isolate': 'IMI375908_culture_3', 'geo_loc_name': 'Ethiopia', 'biosamplemodel': 'MIGS.eu', 'collection_date': '2022', 'isol_growth_condt': 'https://www.cabi.org/products-and-services/bioscience-services/microorganism-supply-services/'} |
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| SRR28051648 | - | - | - | 165707081 | Ethiopia | |
|
PRJNA1043203 SRX23701401 SRP491020 fungi RNA-seq of Fusarium xylarioides IMI375908 in culture Strain morphologies were verified and grown in GYM broth for 7 days at 25oC and 175 RPM. Mycelia were harvested and total RNA extracted using the standard protocol of the RNeasy Mini kit (Qiagen, Hilden, Germany). The RNA quality assessment (Qubit and Fragment Analyzer), library preparation and Next Generation Sequencing (60M paired-end reads per sample) were performed by Genewiz/ Azenta (Frankfurt, Germany). Fastq files were quality-trimmed using trimmomatic parameters "ILLUMINACLIP:$TRIMMOMATIC_DIR/adapters/TruSeq3-PE.fa:2:30:10 SLIDINGWINDOW:4:5 LEADING:5 TRAILING:5 MINLEN:25". IMI375908_culture_4 {'strain': 'IMI 375908', 'isolate': 'IMI375908_culture_4', 'geo_loc_name': 'Ethiopia', 'biosamplemodel': 'MIGS.eu', 'collection_date': '2022', 'isol_growth_condt': 'https://www.cabi.org/products-and-services/bioscience-services/microorganism-supply-services/'} |
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Literature
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