Xanthomonas campestris pv. campestris
TaxID: 340
Basic Information
Xanthomonas campestris pv. campestris
Black Rot of Cabbage
Black rot, caused by the bacterium Xanthomonas campestris pv.Tooltip pathovar campestris (Xcc), is considered the most important and most destructive disease of crucifers, infecting all cultivated varieties of brassicas worldwide. This disease was first described by botanist and entomologist Harrison Garman in Lexington, Kentucky, USA in 1889. Since then, it has been found in nearly every country in which vegetable brassicas are commercially cultivated. Host infection by Xcc can occur at any stage of the plant life cycle. Characteristic symptoms of black rot caused by Xcc are V-shaped chlorotic to necrotic lesions extending from the leaf margins and blackening of vascular tissues. The pathogen thrives in warm and humid climates and is rapidly disseminated in the field. Use of clean seed, crop rotation, and other cultural practices are the primary means of control of black rot. However, in developing countries such as those in South and Eastern Africa, black rot remains the greatest impediment to cabbage cultivation due to unreliable "clean" seed, multiple croppings annually, and high susceptibility of popular local cultivars to the disease.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Lysobacterales
Lysobacteraceae
Xanthomonas
campestris
pv. campestris
Under_Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (12 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Angola | Quarantine pests | — |
| Burkina Faso | Present | — |
| Brazil | A1 list | 2018 |
| Ecuador | Quarantine pests | — |
| India | Quarantine pests | — |
| Jordan | A2 list | 2013 |
| Mexico | Quarantine pests | 2018 |
| Myanmar | Quarantine pests | — |
| French Polynesia | Quarantine pests | — |
| Sudan | Quarantine pests | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000070605.1 | Complete Genome | 5 | 5079 | 5079 | - |
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ASM7060v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR27960892 | - | - | - | 21746450 | - | |
|
SRX23617624 SRP489441 Xcc-8004_RbmL_hrpGstar_genomic_RNA_seq-R1 8004 {'title': 'Xcc-8004_RbmL_hrpGstar_genomic_RNA_seq', 'strain': '8004', 'genotype': 'Gstar', 'molecule': 'total_RNA', 'growth_protocol': 'Moka medium Exponential phase', 'extract_protocol': 'mirvana, Ambion Ribodepletion Sizing more than 200pb Ribominus'} |
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| SRR27960893 | - | - | - | 14282665 | - | |
|
SRX23617625 SRP489441 Xcc-8004_RbmL_hrpGstar_genomic_RNA_seq-R2 8004 {'title': 'Xcc-8004_RbmL_hrpGstar_genomic_RNA_seq', 'strain': '8004', 'genotype': 'Gstar', 'molecule': 'total_RNA', 'growth_protocol': 'Moka medium Exponential phase', 'extract_protocol': 'mirvana, Ambion Ribodepletion Sizing more than 200pb Ribominus'} |
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| SRR27960894 | - | - | - | 15932094 | - | |
|
SRX23617626 SRP489441 Xcc-8004_RbmL_hrpGstar_genomic_RNA_seq-R3 8004 {'title': 'Xcc-8004_RbmL_hrpGstar_genomic_RNA_seq', 'strain': '8004', 'genotype': 'Gstar', 'molecule': 'total_RNA', 'growth_protocol': 'Moka medium Exponential phase', 'extract_protocol': 'mirvana, Ambion Ribodepletion Sizing more than 200pb Ribominus'} |
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Literature
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