Streptomyces scabiei

TaxID: 1930

Basic Information

Scientific Name *

Common Name

Scab of Potato, potato scab

Introduction

Streptomyces scabiei (also wrongly named Streptomyces scabies) is a streptomycete bacterium species found in soils around the world. Unlike most of the 500 or so Streptomyces species it is a plant pathogen causing corky lesions to form on tuber and root crops as well as decreasing the growth of seedlings. Along with other closely related species it causes the potato disease common scab, which is an economically important disease in many potato growing areas. It was first described in 1892, being classified as a fungus, before being renamed in 1914 and again in 1948. Several other species of Streptomyces cause similar diseases to S. scabiei but other, more closely related species, do not. The genome of S. scabiei has been sequenced and is the largest Streptomyces genome known so far. The genome contains a pathogenicity island containing the genes required for S. scabiei to infect plants, and which can be transferred between different species. S. scabiei can produce several related toxins which are the most responsible for its pathogenicity, but several other systems have also been identified which contribute. It can infect young seedlings of all plants, as well as mature root and tuber crops, but is most often associated with causing common scab of potato.

from Wikipedia

Taxonomic Information

Domain/Kingdom

Bacteria

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Species

scabiei

Subspecies

nan

Photos (5 photos)

c

Morphological Features

No morphological description available.

Host Plants (0 host plants)

Data sources: EPPO Global Database and relevant literature.

No host plants available.

Quarantine Status (6 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country	Status	Year Added
Bahrain	Regulated non-quarantine pest	2003
Jordan	A2 list	2013
Mexico	Quarantine pests	—
Oman	Present	—
Qatar	Absent	—
Sudan	Quarantine pests	—

Distribution (8 countries)

Data Sources: EPPO Global Database and GBIF.

8

Present

0

Absent

0

Unknown/Other

Country	Status	State
Argentina	Present	—
Australia	Present	—
Belgium	Present	—
Canada	Present	—
Greece	Present	—
Sri Lanka	Present	—
New Zealand	Present	—
Poland	Present	—

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Download CSV

Genomes (1 records)

Data source: NCBI.

Assembly Accession	Assembly Level	Genome Size(Mb)	Contig N50(Kb)	Scaffold N50(Kb)	BUSCO%	Downloads	Actions
GCF_000738695.1	Scaffold	10	97	565	-	FASTA GFF3
Assembly Name ASM73869v1

Transcriptomes (3 records)

Data source: NCBI.

Run ID	Tissue	Developmental Stage	Sex	Read Count	Location	Actions
SRR31918944	-	-	-	7017194	China: Harbin	Download NCBI
BioProject PRJNA1207108 Experiment ID SRX27276527 Study ID SRP555877 Category general Title RNA-Seq of Streptomyces scabiei Design Description mRNA of Streptomyces scabiei,replicationY1 Strain Y_1 Sample Attributes {'host': 'potato', 'strain': 'LHX1', 'isolate': 'Y_1', 'sample_type': 'cell culture', 'geo_loc_name': 'China: Harbin', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2024-01-03', 'isolation_source': 'China'}
SRR31918943	-	-	-	7308446	China: Harbin	Download NCBI
BioProject PRJNA1207108 Experiment ID SRX27276528 Study ID SRP555877 Category general Title RNA-Seq of Streptomyces scabiei Design Description mRNA of Streptomyces scabiei,replicationY2 Strain Y_2 Sample Attributes {'host': 'potato', 'strain': 'LHX1', 'isolate': 'Y_2', 'sample_type': 'cell culture', 'geo_loc_name': 'China: Harbin', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2024-01-03', 'isolation_source': 'China'}
SRR31918942	-	-	-	7920154	China: Harbin	Download NCBI
BioProject PRJNA1207108 Experiment ID SRX27276529 Study ID SRP555877 Category general Title RNA-Seq of Streptomyces scabiei Design Description mRNA of Streptomyces scabiei,replicationY3 Strain Y_3 Sample Attributes {'host': 'potato', 'strain': 'LHX1', 'isolate': 'Y_3', 'sample_type': 'cell culture', 'geo_loc_name': 'China: Harbin', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2024-01-03', 'isolation_source': 'China'}

DNA Barcodes (3 records)

View all

Data source: BOLD.

Process ID	BIN	Marker	Length	Country	Date	Lat/Lon	Sequence
GBBAC389-15	-	COI-5P	1737	-	-	-	GTGAGCATCCTCAACGAACCTCAGGGTGCCGAGGCAGCGGGTTCCCACTACGAGGACGAGCTGCCGGTCCGGCGCCAGCGGCGTGGTGAGATCGTCGTCAAGTGGCTGACGACGACCGACCACAAGACGATCGGCACGCTGTACCTGGTCACGTCGTTCGCGTTCTTCTGCATCGGCGGCGTCATGGCGCTCCTCATGCGCGCCGAGCTCGCCCGCCCGGGCACGCAGATCATGTCGAACGAGCAGTTCAACCAGGCGTTCACGATGCACGGCACGATCATGCTGCTGATGTTCGCGACGCCGCTGTTCGCCGGTTTCACCAACTGGATCATGCCGCTGCAGATCGGCGCGCCCGACGTGGCGTTCCCGCGGCTGAACATGTTCGCGTACTGGCTGTACCTCTTCGGCTCGCTCATCGCGGTCGGTGGCTTCCTCACCCCGCAGGGCGCGGCCGACTTCGGCTGGTTCGCCTACAGCCCGCTGTCGGACGCGGTCCGCAGCCCGGGTATCGGCGCCGACATGTGGATCATGGGTCTGGCCTTCTCCGGCTTCGGCACCATCCTCGGCGCGGTCAACTTCATCACCACGATCATCTGCATGCGCGCACCCGGCATGACCATGTTCCGCATGCCGATCTTCGTGTGGAACGTGCTGCTGACCGCCGTCCTGGTCCTGCTCGCCTTCCCGGTCCTCGCGGCCGCGCTGTTCGCCCTGGAGGCGGACCGCAAGTTCGGTGCGCACGTCTTCGACCCGGCCAACGGCGGCGCCCTGCTGTGGCAACACCTCTTCTGGTTCTTCGGCCATCCAGAGGTGTACATCATCGCCCTGCCGTTCTTCGGCATCATCTCCGAGGTCATCCCGGTCTTCTCCCGCAAGCCGATGTTCGGCTACATGGGCCTGATCGGAGCGACCATCGCGATCGCCGGCCTCTCGGTCACGGTGTGGGCGCACCACATGTACGTCACCGGAGGCGTGCTCCTGCCGTTCTTCTCCTTCATGACGTTCCTCATCGCCGTACCGACGGGCGTGAAGTTCTTCAACTGGATCGGCACGATGTGGAAGGGCTCGTTGTCCTTCGAGACACCGATGCTCTGGGCCACCGGCTTCCTGATCACCTTCACCTTCGGTGGTCTGACCGGTGTCATCCTGGCCTCGCCGCCGATGGACTTCCATGTCTCGGACTCGTACTTCGTGGTGGCGCACTTCCACTACGTGGTGTTCGGCACCGTCGTCTTCGCGATGTTCTCCGGCTTCCACTTCTGGTGGCCGAAGATGACCGGCAAGATGCTCGACGAGCGCCTGGGCAAGATCACCTTCTGGACGCTGTTCATCGGCTTCCACGGCACGTTCCTCGTCCAGCACTGGCTGGGCGCGGAGGGCATGCCGCGTCGTTACGCGGACTACCTCGCGGCCGACGGGTTCACCGCGCTGAACACGATCTCCACGATCGCCTCGTTCGTTCTCGGTCTGTCGATCCTGCCGTTCCTCTACAACGTGTGGAAGACGGCCAAGTACGGCAAGAAGGTCGAGGTCGACGACCCGTGGGGTTACGGCCGTTCGCTGGAGTGGGCGACCTCCTGCCCGCCGCCCCGCCACAACTTCCTCACCCTGCCGCGGATCCGCAGCGAATCCCCGGCGTTCGACCTGCACCACCCGGAGATCGCCGCGCTCGAACAGCTCGCGCACGGCGGCCCGGCGGCCGATGAGCTCGCGGCCAGCGGCAAGGAGGCCGGCAAG
BACRE9733-25	-	COI-5P	655	Unrecoverable	-	-	CCACCTCTACCTGGTCACGTCGTTCCTGTTCTTCCTGGCGGCCGGCGCGATGGCGCTCGTCATGCGGGCCGAACTGGCCCGGCCGGGCACCCAGATCGTGGACAACGAGCAGTTCAACCAGCTGTTCACGCTGCACGGCACGATCATGCTGCTGCTCTTCGCGACACCGACCTTCGCCGGGTTCGCCAACGAGATCATGCCGTTGCAGATCGGCGCGCCCGACGTCGCCTTCCCCCGGCTGAACATGCTGTCGTACTGGCTGTTCCTGTTCGGCGGGCTGATCGTGATGGGCTCGCTGCTGGTGCCGTCCGGGCCCGCCGACTTCGGCTGGTTCGCCTACGCGCCGCTGAACGGCCTGGAACGGTCACCGGGCATCGGGGCCGACATGTGGATCATGGGGCTGGCGCTGTCCGGGTTCGGGACGATCCTCGGCGCGGTGAACTTCCTGACCACGATCATCGCGATGCGCGCGCCCGGGATGACGATGTTCCGGATGCCGATCTTCACCTGGAACACGCTGTTCACGTCGATCCTGATCCTGATGGCGTTCCCGGTGCTGGCCGCCGCGCTCCTGGTGCTGGAGGCGGACCGGCGGTTCGGCTCGCAGGTCTTCGACGCGGCCAACGGCGGCGCGCTGCTGTGGCAGCACCTGTTC
BACRE9732-25	-	COI-5P	655	Unrecoverable	-	-	CCACCTCTACCTGGTCACGTCGTTCCTGTTCTTCCTGGCGGCCGGCGCGATGGCGCTCGTCATGCGGGCCGAACTGGCCCGGCCGGGCACCCAGATCGTGGACAACGAGCAGTTCAACCAGCTGTTCACGCTGCACGGCACGATCATGCTGCTGCTCTTCGCGACACCGACCTTCGCCGGGTTCGCCAACGAGATCATGCCGTTGCAGATCGGCGCGCCCGACGTCGCCTTCCCCCGGCTGAACATGCTGTCGTACTGGCTGTTCCTGTTCGGCGGGCTGATCGTGATGGGCTCGCTGCTGGTGCCGTCCGGGCCCGCCGACTTCGGCTGGTTCGCCTACGCGCCGCTGAACGGCCTGGAACGGTCACCGGGCATCGGGGCCGACATGTGGATCATGGGGCTGGCGCTGTCCGGGTTCGGGACGATCCTCGGCGCGGTGAACTTCCTGACCACGATCATCGCGATGCGCGCGCCCGGGATGACGATGTTCCGGATGCCGATCTTCACCTGGAACACGCTGTTCACGTCGATCCTGATCCTGATGGCGTTCCCGGTGCTGGCCGCCGCGCTCCTGGTGCTGGAGGCGGACCGGCGGTTCGGCTCGCAGGTCTTCGACGCGGCCAACGGCGGCGCGCTGCTGTGGCAGCACCTGTTC

Streptomyces scabiei

Basic Information

Taxonomic Information

Photos (5 photos)

Morphological Features

Host Plants (0 host plants)

Quarantine Status (6 records)

Distribution (8 countries)

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Genomes (1 records)

Transcriptomes (3 records)

DNA Barcodes (3 records)

Literature

State Information