Sugarcane mosaic virus
TaxID: 12224
Basic Information
Sugarcane mosaic virus
Sugarcane Mosaic Virus
Sugarcane mosaic virus (SCMV) is a plant virus of the family Potyviridae. The virus was first noticed in Puerto Rico in 1916 and spread rapidly throughout the southern United States in the early 1920s. SCMV causes sugarcane mosaic disease, which is of great concern because of the high economic impact it has on sugarcane and maize.
from Wikipedia
Taxonomic Information
unclassified
Pisuviricota
Stelpaviricetes
Patatavirales
Potyviridae
Potyvirus
Potyvirus sacchari
nan
No Rank
nan
k__unclassified;p__Pisuviricota;c__Stelpaviricetes;o__Patatavirales;f__Potyviridae;g__Potyvirus;s__Potyvirus sacchari
nan
Viruses/Viroids
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (12 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Canna sp. | Host |
| Cucurbita moschata | Host |
| Cymbopogon nardus | Host |
| Cymbopogon winterianus | Host |
| Eleusine indica | Host |
| Panicum miliaceum | Host |
| Saccharum officinarum | Host |
| Setaria italica | Host |
| Setaria viridis | Host |
| Sorghum halepense | Host |
Quarantine Status (11 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Burkina Faso | Present | — |
| Bangladesh | Quarantine pests | — |
| Bahrain | Quarantine pests | — |
| Ghana | Quarantine pests | — |
| India | Quarantine pests | — |
| Jamaica | Quarantine pests | — |
| New Caledonia | Quarantine pests | — |
| Oman | Absent | — |
| French Polynesia | Quarantine pests | — |
| Qatar | Absent | — |
Distribution (4 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Ethiopia | Present | — |
| Hungary | Present | — |
| Kenya | Present | — |
| South Africa | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000854025.1 | Complete Genome | - | 9 | 9 | - |
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ViralProj14994 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR26904525 | - | - | - | 594272 | Kenya | |
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PRJNA1043087 SRX22598625 SRP473339 virus Maize with MLN symptoms Total RNA extraction from leaf material, ribosomal depletion, random primed cDNA synthesis followed by whole transciptome amplification. M5 {'host': 'Zea mays', 'isolate': 'M5', 'geo_loc_name': 'Kenya', 'biosamplemodel': 'Viral', 'collection_date': '2018', 'isolation_source': 'virus infected plant'} |
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| SRR26904524 | - | - | - | 1348514 | Kenya | |
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PRJNA1043087 SRX22598626 SRP473339 virus Maize with MLN symptoms Total RNA extraction from leaf material, ribosomal depletion, random primed cDNA synthesis followed by whole transciptome amplification. M6 {'host': 'Zea mays', 'isolate': 'M6', 'geo_loc_name': 'Kenya', 'biosamplemodel': 'Viral', 'collection_date': '2018', 'isolation_source': 'virus infected plant'} |
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| SRR29452582 | Leaf | Tassel Visible | - | 37779842 | China: Puer City,Yunnan Province | |
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PRJNA1124355 SRX24964798 SRP514594 virus RNA metavirome-seq of maize leaves Metatranscriptome libraries were prepared following TruSeqTM RNA sample preparation Kit , using 5g of total RNA. Shortly, rRNA removal by Ribo-ZeroTM rRNA Removal Kits (Epicenter), fragmented using fragmentation buffer. cDNA synthesis, end repair, A-base addition and ligation of the NGS-indexed adaptors were performed according to NGSs protocol. YN_01 {'age': '2 month', 'host': 'Maize', 'tissue': 'Leaf', 'ecotype': 'Yunnan', 'isolate': 'YN_01', 'lat_lon': '23.24 N 101.7 E', 'dev_stage': 'Tassel Visible', 'env_medium': 'Corn leaves', 'geo_loc_name': 'China: Puer City,Yunnan Province', 'biosamplemodel': 'MIUVIG.plant-associated', 'collection_date': '2023-12-21', 'env_broad_scale': 'RNA metavirome', 'env_local_scale': 'mid-altitude mountainous areas', 'isolation_source': 'Plant leaves'} |
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Literature
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