Agrobacterium tumefaciens
TaxID: 358
Basic Information
Agrobacterium tumefaciens
Crown Gall
Agrobacterium tumefaciens is the causal agent of crown gall disease (the formation of tumours) in over 140 species of eudicots. It is a rod-shaped, Gram-negative soil bacterium. Symptoms are caused by the insertion of a small segment of DNA (known as T-DNA, for 'transfer DNA', not to be confused with tRNA that transfers amino acids during protein synthesis), from a plasmid into the plant cell, which is incorporated at a semi-random location into the plant genome. Plant genomes can be engineered by use of Agrobacterium for the delivery of sequences hosted in T-DNA binary vectors. Agrobacterium tumefaciens is an Alphaproteobacterium of the family Rhizobiaceae, which includes the nitrogen-fixing legume symbionts. Unlike the nitrogen-fixing symbionts, tumor-producing Agrobacterium species are pathogenic and do not benefit the plant. The wide variety of plants affected by Agrobacterium makes it of great concern to the agriculture industry. Economically, A. tumefaciens is a serious pathogen of walnuts, grape vines, stone fruits, nut trees, sugar beets, horse radish, and rhubarb, and the persistent nature of the tumors or galls caused by the disease make it particularly harmful for perennial crops. Agrobacterium tumefaciens grows optimally at 28 C (82 F). The doubling time can range from 2.5 C4h depending on the media, culture format, and level of aeration. At temperatures above 30 C (86 F), A. tumefaciens begins to experience heat shock which is likely to result in errors in cell division.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Alphaproteobacteria
Hyphomicrobiales
Rhizobiaceae
Agrobacterium
tumefaciens
nan
Species
nan
k__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;g__Agrobacterium;s__Agrobacterium tumefaciens
nan
Prokaryotes
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (17 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Brassica | Host |
| Corylus avellana | Host |
| Cydonia oblonga | Host |
| Juglans regia | Host |
| Malus | Host |
| Mangifera indica | Host |
| Musa x paradisiaca | Host |
| Prunus armeniaca | Host |
| Prunus avium | Host |
| Prunus cerasus | Host |
Quarantine Status (42 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Burkina Faso | Present | — |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Bahrain | Quarantine pests | 2003 |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Denmark | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (74 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Afghanistan | Present | — |
| Algeria | Present | — |
| Argentina | Present | — |
| Australia | Present | |
| Austria | Present | — |
| Belgium | Present | — |
| Bulgaria | Present | — |
| Bermuda | Present | — |
| Bolivia (Plurinational State of) | Present | — |
| Brazil | Present | — |
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000192635.1 | Complete Genome | 5 | 2823 | 2823 | - |
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ASM19263v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR32456519 | - | - | - | 8950116 | Thailand: Bangkok | |
|
PRJNA1226920 SRX27770998 SRP565649 general RNA-seq for HDR-20a (replicate1) Total RNA from the HDR-20a strain (replicate 1) was extracted, purified, and used for library construction, followed by Illumina sequencing for transcriptomic analysis. RNA {'host': '-', 'strain': 'HDR-20a Agrobacterium tumefaciens C58 (replicate1)', 'isolate': 'RNA', 'sample_type': 'RNA', 'geo_loc_name': 'Thailand: Bangkok', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2023-06-07', 'isolation_source': 'Bacterial cells'} |
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| SRR32456518 | - | - | - | 9511855 | Thailand: Bangkok | |
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PRJNA1226920 SRX27770999 SRP565649 general RNA-seq for HDR-20a (replicate2) Total RNA from the HDR-20a strain (replicate 2) was extracted, purified, and used for library construction, followed by Illumina sequencing for transcriptomic analysis. RNA {'host': '-', 'strain': 'HDR-20a Agrobacterium tumefaciens C58 (replicate2)', 'isolate': 'RNA', 'sample_type': 'RNA', 'geo_loc_name': 'Thailand: Bangkok', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2023-06-07', 'isolation_source': 'Bacterial cells'} |
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| SRR32456517 | - | - | - | 9590985 | Thailand: Bangkok | |
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PRJNA1226920 SRX27771000 SRP565649 general RNA-seq for HDR-20a (replicate3) Total RNA from the HDR-20a strain (replicate 3) was extracted, purified, and used for library construction, followed by Illumina sequencing for transcriptomic analysis. RNA {'host': '-', 'strain': 'HDR-20a Agrobacterium tumefaciens C58 (replicate3)', 'isolate': 'RNA', 'sample_type': 'RNA', 'geo_loc_name': 'Thailand: Bangkok', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2023-06-07', 'isolation_source': 'Bacterial cells'} |
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DNA Barcodes (23 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBBAC7482-15 | - | COI-5P | 519 | India | 2010-04-02 | 23.5863, 81.173004 | |
| GBBAC7480-15 | - | COI-5P | 519 | - | 2004-10-05 | - | |
| GBBAC7478-15 | - | COI-5P | 519 | China | 2008-01-02 | - | |
| GBBAC7474-15 | - | COI-5P | 519 | - | - | - | |
| GBBAC6993-15 | - | COI-5P | 705 | - | - | - | |
| GBBAC6769-15 | - | COI-5P | 657 | - | 2004-10-05 | - | |
| GBBAC5574-15 | - | COI-5P | 666 | India | 2010-04-02 | 23.5863, 81.173004 | |
| GBBAC5569-15 | - | COI-5P | 666 | China | 2008-01-02 | - | |
| GBBAC5543-15 | - | COI-5P | 666 | - | - | - | |
| GBBAC4986-15 | - | COI-5P | 666 | - | - | - |
Literature
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