Agrobacterium tumefaciens

TaxID: 358

Basic Information

Agrobacterium tumefaciens

Crown Gall

Agrobacterium tumefaciens is the causal agent of crown gall disease (the formation of tumours) in over 140 species of eudicots. It is a rod-shaped, Gram-negative soil bacterium. Symptoms are caused by the insertion of a small segment of DNA (known as T-DNA, for 'transfer DNA', not to be confused with tRNA that transfers amino acids during protein synthesis), from a plasmid into the plant cell, which is incorporated at a semi-random location into the plant genome. Plant genomes can be engineered by use of Agrobacterium for the delivery of sequences hosted in T-DNA binary vectors. Agrobacterium tumefaciens is an Alphaproteobacterium of the family Rhizobiaceae, which includes the nitrogen-fixing legume symbionts. Unlike the nitrogen-fixing symbionts, tumor-producing Agrobacterium species are pathogenic and do not benefit the plant. The wide variety of plants affected by Agrobacterium makes it of great concern to the agriculture industry. Economically, A. tumefaciens is a serious pathogen of walnuts, grape vines, stone fruits, nut trees, sugar beets, horse radish, and rhubarb, and the persistent nature of the tumors or galls caused by the disease make it particularly harmful for perennial crops. Agrobacterium tumefaciens grows optimally at 28 C (82 F). The doubling time can range from 2.5 C4h depending on the media, culture format, and level of aeration. At temperatures above 30 C (86 F), A. tumefaciens begins to experience heat shock which is likely to result in errors in cell division.

from Wikipedia

Taxonomic Information

Bacteria

Pseudomonadota

Alphaproteobacteria

Hyphomicrobiales

Rhizobiaceae

Agrobacterium

tumefaciens

nan

Photos (5 photos)

Agrobacterium tumefaciens
c
(c) Alex Uematsu@BY-NC
Agrobacterium tumefaciens
c
(c) Alex Uematsu@BY-NC
Agrobacterium tumefaciens
c
(c) Alex Uematsu@BY-NC
Agrobacterium tumefaciens
c
(c) Alex Uematsu@BY-NC
Agrobacterium tumefaciens
c
(c) elainebai@BY-NC

Morphological Features

No morphological description available.

Host Plants (17 host plants)

Data sources: EPPO Global Database and relevant literature.

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Quarantine Status (42 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country Status Year Added
Austria RNQP ((EU) 2019/2072 Annex IV) 2019
Belgium RNQP ((EU) 2019/2072 Annex IV) 2019
Burkina Faso Present —
Bulgaria RNQP ((EU) 2019/2072 Annex IV) 2019
Bahrain Quarantine pests 2003
Switzerland Regulated non-quarantine pest 2019
Cyprus RNQP ((EU) 2019/2072 Annex IV) 2019
Czechia RNQP ((EU) 2019/2072 Annex IV) 2019
Germany RNQP ((EU) 2019/2072 Annex IV) 2019
Denmark RNQP ((EU) 2019/2072 Annex IV) 2019
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Distribution (74 countries)

Data Sources: EPPO Global Database and GBIF.

74
Present
0
Absent
0
Unknown/Other
Country Status State
Afghanistan Present —
Algeria Present —
Argentina Present —
Australia Present
Austria Present —
Belgium Present —
Bulgaria Present —
Bermuda Present —
Bolivia (Plurinational State of) Present —
Brazil Present —
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Genomes (1 records)

Data source: NCBI.

Assembly Accession Assembly Level Genome Size(Mb) Contig N50(Kb) Scaffold N50(Kb) BUSCO% Downloads Actions
GCF_000192635.1 Complete Genome 5 2823 2823 -

Transcriptomes (3 records)

Data source: NCBI.

Run ID Tissue Developmental Stage Sex Read Count Location Actions
SRR32456519 - - - 8950116 Thailand: Bangkok
SRR32456518 - - - 9511855 Thailand: Bangkok
SRR32456517 - - - 9590985 Thailand: Bangkok

DNA Barcodes (23 records)

View all

Data source: BOLD.

Process ID BIN Marker Length Country Date Lat/Lon Sequence
GBBAC7482-15 - COI-5P 519 India 2010-04-02 23.5863, 81.173004
GBBAC7480-15 - COI-5P 519 - 2004-10-05 -
GBBAC7478-15 - COI-5P 519 China 2008-01-02 -
GBBAC7474-15 - COI-5P 519 - - -
GBBAC6993-15 - COI-5P 705 - - -
GBBAC6769-15 - COI-5P 657 - 2004-10-05 -
GBBAC5574-15 - COI-5P 666 India 2010-04-02 23.5863, 81.173004
GBBAC5569-15 - COI-5P 666 China 2008-01-02 -
GBBAC5543-15 - COI-5P 666 - - -
GBBAC4986-15 - COI-5P 666 - - -
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Literature