Pectobacterium atrosepticum
TaxID: 29471
Basic Information
Pectobacterium atrosepticum
Black Leg of Potato
Pectobacterium atrosepticum is a species of bacterium. It is a plant pathogen causing blackleg of potato. Its type strain is CFBP 1526T (=LMG 2386T =NCPPB 549T =ICMP 1526T). Its genome has been sequenced.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Enterobacterales
Pectobacteriaceae
Pectobacterium
atrosepticum
nan
Species
nan
k__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Pectobacterium;s__Pectobacterium atrosepticum
nan
Prokaryotes
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (11 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Argentina | Absent | 2019 |
| Bahrain | Regulated non-quarantine pest | 2003 |
| Egypt | Regulated non-quarantine pest | 2018 |
| Indonesia | Absent | — |
| Jordan | A2 list | 2013 |
| Mexico | Quarantine pests | 2018 |
| Malaysia | Quarantine pests | — |
| Nepal | Quarantine pests | — |
| Oman | Present | — |
| Qatar | Absent | — |
Distribution (1 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Australia | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000696465.1 | Complete Genome | 5 | 5004 | 5004 | - |
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ASM69646v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR26861802 | - | - | - | 10560494 | - | |
|
PRJNA1041790 SRX22556739 SRP472547 Growing wild type 2 NEBNext Ultra II WT_G_2 {'host': 'Nicotiana tabacum', 'strain': 'SCRI1043', 'isolate': 'WT_G_2', 'sample_type': 'cell culture', 'geo_loc_name': 'Russia: Kazan', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2021'} |
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| SRR26861801 | - | - | - | 11989774 | - | |
|
PRJNA1041790 SRX22556740 SRP472547 Growing wild type 3 NEBNext Ultra II WT_G_3 {'host': 'Nicotiana tabacum', 'strain': 'SCRI1043', 'isolate': 'WT_G_3', 'sample_type': 'cell culture', 'geo_loc_name': 'Russia: Kazan', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2021'} |
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| SRR26861800 | - | - | - | 10970598 | - | |
|
PRJNA1041790 SRX22556741 SRP472547 Carbon starving wild type 1 NEBNext Ultra II WT_S_1 {'host': 'Nicotiana tabacum', 'strain': 'SCRI1043', 'isolate': 'WT_S_1', 'sample_type': 'cell culture', 'geo_loc_name': 'Russia: Kazan', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2021'} |
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Literature
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