Pseudomonas cichorii
TaxID: 36746
Basic Information
Pseudomonas cichorii
Leaf Rot of Capsicum
Pseudomonas cichorii is a Gram-negative soil bacterium that is pathogenic to plants. It has a wide host range, and can have an important economical impact on lettuce, celery and chrysanthemum crops. P. cichorii was first isolated on endives (Cichorium endivia), from which it derives its name. It produces 6-aminopenicillanic acid. Based on 16S rRNA analysis, P. cichorii has been placed in the P. syringae group.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
cichorii
nan
Species
nan
k__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas cichorii
nan
Prokaryotes
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (7 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Capsicum annuum | Host |
| Cichorium endivia | Host |
| Ficus benghalensis | Host |
| Lactuca sativa | Host |
| Nicotiana tabacum | Host |
| Perilla frutescens | Host |
| Pinellia ternata | Host |
Quarantine Status (18 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Burkina Faso | Absent | — |
| Costa Rica | Absent | — |
| Dominican Republic | Quarantine pests | — |
| Ecuador | Quarantine pests | — |
| Egypt | Abesent | 2018 |
| Guatemala | Absent | — |
| India | Quarantine pests | — |
| Jordan | A2 list | 2013 |
| Sri Lanka | Quarantine pests | — |
| Mexico | Quarantine pests | 2018 |
Distribution (39 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | |
| Burundi | Present | — |
| Belgium | Present | — |
| Bulgaria | Present | — |
| Brazil | Present | |
| Barbados | Present | — |
| Canada | Present | |
| Canada | Absent | |
| Chile | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (3 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_018343775.1 | Complete Genome | 5 | 5984 | 5984 | - |
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ASM1834377v1 |
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| GCF_003416715.1 | Scaffold | 5 | 150 | 159 | - |
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ASM341671v1 |
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| GCF_003415695.1 | Scaffold | 5 | 256 | 312 | - |
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ASM341569v1 |
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Transcriptomes (2 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR4063606 | - | - | - | 23883007 | South Korea: Iksan | |
|
PRJNA338910 SRX2052673 SRP082872 prokaryote Influence of Dark condition on the transcriptome of JBC1 Sequencing, quality check, data analysis by Bowtie and inhouse script, report JBC1 {'host': 'tomat0', 'strain': 'JBC1', 'sample_type': 'cell culture', 'geo_loc_name': 'South Korea: Iksan', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2015-03-01'} |
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| SRR4063605 | - | - | - | 27799552 | South Korea: Iksan | |
|
PRJNA338910 SRX2052672 SRP082872 prokaryote Influence of Green light on the transcriptome of JBC1 Sequencing, quality check, data analysis by Bowtie and inhouse script, report JBC1 {'host': 'tomato', 'strain': 'JBC1', 'sample_type': 'cell culture', 'geo_loc_name': 'South Korea: Iksan', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2015-03-01'} |
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DNA Barcodes (1 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBBAC3751-15 | - | COI-5P | 654 | South Korea | - | 36.402386, 127.762245 |
Literature
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