Sclerotinia sclerotiorum
TaxID: 5180
Basic Information
Sclerotinia sclerotiorum
Gewoon knolkelkje, Root Rot
Sclerotinia sclerotiorum is a plant pathogenic fungus and can cause a disease called white mold if conditions are conducive. S. sclerotiorum can also be known as cottony rot, watery soft rot, stem rot, drop, crown rot and blossom blight. A key characteristic of this pathogen is its ability to produce black resting structures known as sclerotia and white fuzzy growths of mycelium on the plant it infects. These sclerotia give rise to a fruiting body in the spring that produces spores in a sac which is why fungi in this class are called sac fungi (Ascomycota). This pathogen can occur on many continents and has a wide host range of plants. When S. sclerotiorum is onset in the field by favorable environmental conditions, losses can be great and control measures should be considered.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Leotiomycetes
Helotiales
Sclerotiniaceae
Sclerotinia
sclerotiorum
Undefined
Species
nan
d__Eukaryota;p__Ascomycota;c__Leotiomycetes;o__Helotiales;f__Sclerotiniaceae;g__Sclerotinia;s__Sclerotinia sclerotiorum
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (2 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Chenopodium quinoa | Host |
| Solanum tuberosum | Host |
Quarantine Status (36 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Burkina Faso | Absent | — |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Cambodia | Quarantine pests | — |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Cuba | Present | — |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (46 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | — |
| Austria | Present | — |
| Belgium | Present | — |
| Bermuda | Present | — |
| Brazil | Present | — |
| Canada | Present | — |
| Switzerland | Present | — |
| Chile | Present | — |
| China | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_019022465.1 | Contig | 38 | 1900 | 1900 | - |
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ASM1902246v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR36282000 | - | - | - | 38763206 | not applicable | |
|
PRJNA1367782 SRX31315395 SRP650902 fungi Sclerotinia sclerotiorum ESR-26 before inoculation replication 2 mRNA library Iso26_0DI-R2 {'host': 'Brassica juncea', 'isolate': 'Iso26_0DI-R2', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_method': 'Fungal mycelium'} |
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| SRR36281999 | - | - | - | 34980375 | not applicable | |
|
PRJNA1367782 SRX31315396 SRP650902 fungi Sclerotinia sclerotiorum ESR-26 one day after inoculation replication 1 mRNA library Iso26_1DI-R1 {'host': 'Brassica juncea', 'isolate': 'Iso26_1DI-R1', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_method': 'Fungal mycelium'} |
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| SRR36281998 | - | - | - | 34299017 | not applicable | |
|
PRJNA1367782 SRX31315397 SRP650902 fungi Sclerotinia sclerotiorum ESR-26 one day after inoculation replication 2 mRNA library Iso26_1DI-R2 {'host': 'Brassica juncea', 'isolate': 'Iso26_1DI-R2', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_method': 'Fungal mycelium'} |
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Literature
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