Saccharum spontaneum
TaxID: 62335
Basic Information
Saccharum spontaneum
Kash, Wild Sugarcane, wild sugarcane
Saccharum spontaneum (wild sugarcane, kans grass) is a grass native throughout much of tropical and subtropical Asia, northern Australia, and eastern and northern Africa. It is a perennial grass, growing up to three meters in height, with spreading rhizomatous roots. The plant has hybridized with Saccharum officinarum, a domesticated sugarcane. The hybridization has produced Saccharum barberi and Saccharum sinense.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Poales
Poaceae
Saccharum
spontaneum
Unclassified
Species
nan
d__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Poales;f__Poaceae;g__Saccharum;s__Saccharum spontaneum
nan
Weeds
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (8 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (63 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Afghanistan | Present | — |
| Algeria | Present | — |
| Argentina | Present | — |
| Australia | Present | — |
| Burkina Faso | Present | — |
| Bangladesh | Present | — |
| Bhutan | Present | — |
| Cambodia | Present | — |
| China | Present | — |
| Cameroon | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_003544955.1 | Chromosome | 3133 | 44 | 91359 | - |
|
|
|
Sspon.HiC_chr_asm |
|||||||
Transcriptomes (6 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR35896386 | leaf | not collected | - | 14289863 | missing | |
|
PRJNA1353852 SRX30945705 SRP637513 weed RNA-seq of Saccharum spontaneum: SES-208 RNA not collected {'tissue': 'leaf', 'ecotype': 'not collected', 'isolate': 'not collected', 'cultivar': 'not collected', 'dev_stage': 'not collected', 'sample_type': 'm-SES-mature-leaf-3-1duplication', 'biosamplemodel': 'Plant'} |
||||||
| SRR35896381 | leaf | not collected | - | 8911544 | missing | |
|
PRJNA1353852 SRX30945710 SRP637513 weed RNA-seq of Saccharum spontaneum: SES-208 RNA not collected {'tissue': 'leaf', 'ecotype': 'not collected', 'isolate': 'not collected', 'cultivar': 'not collected', 'dev_stage': 'not collected', 'sample_type': 'pre-m-SES-leaf-roll-1duplication', 'biosamplemodel': 'Plant'} |
||||||
| SRR35896380 | leaf | not collected | - | 8835078 | missing | |
|
PRJNA1353852 SRX30945711 SRP637513 weed RNA-seq of Saccharum spontaneum: SES-208 RNA not collected {'tissue': 'leaf', 'ecotype': 'not collected', 'isolate': 'not collected', 'cultivar': 'not collected', 'dev_stage': 'not collected', 'sample_type': 'pre-m-SES-m-leaf-1duplication', 'biosamplemodel': 'Plant'} |
||||||
| SRR37004206 | - | - | - | 47831222 | missing | |
|
PRJNA1388456 SRX31953812 SRP667955 general Saccharum spontaneum US56-15-8 Gene Expression Profiling US56-15-8 {'cultivar': 'US56-15-8', 'biosamplemodel': 'MIGS.eu'} |
||||||
| SRR37004205 | - | - | - | 41509259 | missing | |
|
PRJNA1388667 SRX31953813 SRP667957 general Saccharum spontaneum US56-15-8 Gene Expression Profiling US56-15-8 {'cultivar': 'US56-15-8', 'biosamplemodel': 'MIGS.eu'} |
||||||
| SRR37004204 | - | - | - | 43833402 | missing | |
|
PRJNA1387962 SRX31953814 SRP667958 general Saccharum spontaneum US56-15-8 Gene Expression Profiling US56-15-8 {'cultivar': 'US56-15-8', 'biosamplemodel': 'MIGS.eu'} |
||||||
DNA Barcodes (33 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GENG902-14 | - | rbcL | 580 | India | 2014-09-26 | 22.251, 70.701 | |
| GBITS70337-21 | - | ITS | 591 | - | - | - | |
| GBITS70336-21 | - | ITS | 591 | - | - | - | |
| GBITS70335-21 | - | ITS | 687 | India | - | - | |
| GBITS70334-21 | - | ITS | 682 | India | - | - | |
| GBITS70333-21 | - | ITS | 680 | India | - | - | |
| GBITS70332-21 | - | ITS | 668 | India | - | - | |
| GBITS45046-21 | - | ITS | 589 | - | - | - | |
| GBITS45045-21 | - | ITS | 589 | - | - | - | |
| GBITS45044-21 | - | ITS | 589 | - | - | - |
Literature
Fetching literature from NCBI PubMed...
Failed to fetch literature