Agrobacterium radiobacter
TaxID: 362
Basic Information
Agrobacterium radiobacter
Agrobacterium genomosp. 4, Bacterial Crown Gall
Agrobacterium radiobacter is the type species of the genus Agrobacterium, a genus of Gram-negative bacteria that cause tumors in plants. It was incorrectly synonymized with Agrobacterium tumefaciens until 2022. This species is widely found in soil, in plant rhizospheres, and in human clinical specimens. Some members such as B6 harbor a tumor-inducing (Ti) plasmid and cause crown gall disease in plants. The type strain ATCC 19358 does not carry such a plasmid and is nonpathogenic. The incorrect synonymization with A. tumefaciens was due to a strain B6 (ATCC 23308) being assigned as the type strain of A. tumefaciens in 1980, when B6 should be classified as A. radiobacter. One consequence is that this B6 strain is very well-studied in the lab. Another consequence is that research done on "A. tumefaciens" between 1980 and 2022 are possibly describing A. radiobacter instead. To determine the actual species, one should look up the 16S or genomic sequences of the strain used in the study.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Alphaproteobacteria
Hyphomicrobiales
Rhizobiaceae
Agrobacterium
radiobacter
nan
Species
nan
k__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;g__Agrobacterium;s__Agrobacterium radiobacter
nan
Prokaryotes
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (17 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Brassica | Host |
| Corylus avellana | Host |
| Cydonia oblonga | Host |
| Juglans regia | Host |
| Malus | Host |
| Mangifera indica | Host |
| Musa x paradisiaca | Host |
| Prunus armeniaca | Host |
| Prunus avium | Host |
| Prunus cerasus | Host |
Quarantine Status (7 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (60 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Armenia | Present | — |
| Australia | Present | — |
| Austria | Present | — |
| Belgium | Present | — |
| Bulgaria | Present | — |
| Bosnia and Herzegovina | Present | — |
| Belarus | Present | — |
| Brazil | Present | — |
| Canada | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_013317795.2 | Complete Genome | 5 | 2974 | 2974 | - |
|
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ASM1331779v2 |
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| GCF_001541305.1 | Contig | 5 | 480 | 480 | - |
|
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ASM154130v1 |
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Transcriptomes (0 records)
Data source: NCBI.
No transcriptome records available.
DNA Barcodes (5 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBBAC7481-15 | - | COI-5P | 519 | - | - | - | |
| GBBAC7479-15 | - | COI-5P | 519 | - | - | - | |
| GBBAC5572-15 | - | COI-5P | 666 | - | - | - | |
| GBBAC1680-15 | - | COI-5P | 726 | - | - | - | |
| BACRE574-25 | - | COI-5P | 703 | Unrecoverable | - | - |
Literature
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