Agrobacterium radiobacter

TaxID: 362

Basic Information

Agrobacterium radiobacter

Agrobacterium genomosp. 4, Bacterial Crown Gall

Agrobacterium radiobacter is the type species of the genus Agrobacterium, a genus of Gram-negative bacteria that cause tumors in plants. It was incorrectly synonymized with Agrobacterium tumefaciens until 2022. This species is widely found in soil, in plant rhizospheres, and in human clinical specimens. Some members such as B6 harbor a tumor-inducing (Ti) plasmid and cause crown gall disease in plants. The type strain ATCC 19358 does not carry such a plasmid and is nonpathogenic. The incorrect synonymization with A. tumefaciens was due to a strain B6 (ATCC 23308) being assigned as the type strain of A. tumefaciens in 1980, when B6 should be classified as A. radiobacter. One consequence is that this B6 strain is very well-studied in the lab. Another consequence is that research done on "A. tumefaciens" between 1980 and 2022 are possibly describing A. radiobacter instead. To determine the actual species, one should look up the 16S or genomic sequences of the strain used in the study.

from Wikipedia

Taxonomic Information

Bacteria

Pseudomonadota

Alphaproteobacteria

Hyphomicrobiales

Rhizobiaceae

Agrobacterium

radiobacter

nan

Photos (5 photos)

Agrobacterium radiobacter
c
(c) Edita Jakubauskaitė@BY-NC
Agrobacterium radiobacter
c
(c) Susan J. Hewitt@BY-NC
Agrobacterium radiobacter
c
(c) Vladimir Bryukhov@BY-NC
Agrobacterium radiobacter
c
(c) Susan J. Hewitt@BY-NC
Agrobacterium radiobacter
c
(c) kayfoo@BY-NC

Morphological Features

No morphological description available.

Host Plants (17 host plants)

Data sources: EPPO Global Database and relevant literature.

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Quarantine Status (7 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country Status Year Added
Cuba Absent —
Sri Lanka Quarantine pests —
Mexico Quarantine pests —
Nicaragua Absent —
Nepal Quarantine pests —
Panama Quarantine pests —
French Polynesia Quarantine pests —

Distribution (60 countries)

Data Sources: EPPO Global Database and GBIF.

60
Present
0
Absent
0
Unknown/Other
Country Status State
Argentina Present —
Armenia Present —
Australia Present —
Austria Present —
Belgium Present —
Bulgaria Present —
Bosnia and Herzegovina Present —
Belarus Present —
Brazil Present —
Canada Present —
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Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Download CSV

Genomes (2 records)

Data source: NCBI.

Assembly Accession Assembly Level Genome Size(Mb) Contig N50(Kb) Scaffold N50(Kb) BUSCO% Downloads Actions
GCF_013317795.2 Complete Genome 5 2974 2974 -
GCF_001541305.1 Contig 5 480 480 -

Transcriptomes (0 records)

Data source: NCBI.

No transcriptome records available.

DNA Barcodes (5 records)

View all

Data source: BOLD.

Process ID BIN Marker Length Country Date Lat/Lon Sequence
GBBAC7481-15 - COI-5P 519 - - -
GBBAC7479-15 - COI-5P 519 - - -
GBBAC5572-15 - COI-5P 666 - - -
GBBAC1680-15 - COI-5P 726 - - -
BACRE574-25 - COI-5P 703 Unrecoverable - -

Literature