Xanthomonas oryzae pv. oryzicola
TaxID: 129394
Basic Information
Xanthomonas oryzae pv. oryzicola
Bls
nan
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Lysobacterales
Lysobacteraceae
Xanthomonas
oryzae
pv. oryzicola
Under_Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas oryzae
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
Cells are short rods, measuring 0.3–0.5 × 1–2 µm, occurring singly, rarely in pairs. They are Gram-negative, non-spore-forming, and motile with a single polar flagellum. Colonies on nutrient agar are circular, convex, smooth, with entire margins, appearing whitish-yellow to straw-yellow and opaque; on NA medium colonies are initially white turning pale yellow, reaching 1–2 mm in diameter after 3 days.
TNAU Agritech Portal (Tamil Nadu Agricultural University). Xanthomonas oryzae pv. oryzicola datasheet.
Host Plants (16 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Digitaria horizontalis | Host |
| Eleusine indica | Host |
| Leersia hexandra | Host |
| Leptochloa filiformis | Host |
| Oryza barthii | Host |
| Oryza glaberrima | Host |
| Oryza latifolia | Host |
| Oryza longistaminata | Host |
| Oryza minuta | Host |
| Oryza officinalis | Host |
Quarantine Status (61 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Argentina | Absent | 2019 |
| Armenia | Absent | — |
| Austria | Quarantine pests | 2019 |
| Azerbaijan | Absent | 2024 |
| Belgium | Unknow | 2019 |
| Burkina Faso | Present | — |
| Bulgaria | Quarantine pest ((EU) 2019/2072 Annex II A) | 2019 |
| Belarus | Absent | — |
| Brazil | A1 list | 2018 |
| Switzerland | A1 list | 2019 |
Distribution (29 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Australia | Present | |
| Burundi | Present | — |
| Burkina Faso | Present | — |
| Bangladesh | Present | — |
| Cambodia | Present | — |
| China | Present | |
| Côte d'Ivoire | Present | — |
| Guinea | Present | — |
| Indonesia | Present | — |
| India | Present | — |
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000940825.1 | Complete Genome | 5 | 5080 | 5080 | - |
|
|
|
ASM94082v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR23926198 | - | - | - | 16766709 | - | |
|
PRJNA946931 SRX19736411 SRP428353 RNA sequences of Xanthomonas oryzae pv. oryzicola strain RS105 cultured for 12 h normal RNA sequences of Xanthomonas oryzae pv. oryzicola strain RS105 RS105 {'host': 'oryzae', 'strain': 'RS105', 'pathovar': 'oryzicola', 'biosamplemodel': 'Microbe, viral or environmental', 'biosample_attributes': 'CKRS12h2'} |
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| SRR23926197 | - | - | - | 17087818 | - | |
|
PRJNA946931 SRX19736412 SRP428353 RNA sequences of Xanthomonas oryzae pv. oryzicola strain RS105 cultured for 12 h normal RNA sequences of Xanthomonas oryzae pv. oryzicola strain RS105 RS105 {'host': 'oryzae', 'strain': 'RS105', 'pathovar': 'oryzicola', 'biosamplemodel': 'Microbe, viral or environmental', 'biosample_attributes': 'CKRS12h3'} |
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| SRR23926196 | - | - | - | 17319040 | - | |
|
PRJNA946931 SRX19736413 SRP428353 RNA sequence of Xanthomonas oryzae pv. oryzicola strain RS105 cocultured with Bacillus velezensis 504 for 12 h normal RNA sequences of Xanthomonas oryzae pv. oryzicola strain RS105 RS105 {'host': 'oryzae', 'strain': 'RS105', 'pathovar': 'oryzicola', 'biosamplemodel': 'Microbe, viral or environmental', 'biosample_attributes': 'RS12h1'} |
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Literature
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