Pseudomonas amygdali pv. tabaci
TaxID: 322
Basic Information
Pseudomonas amygdali pv. tabaci
Tobacco Wildfire Disease
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
amygdali
pv. tabaci
Under_Species
k__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas amygdali
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (2 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Prunus dulcis | Host |
| Prunus persica | Host |
Quarantine Status (12 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Burundi | Quarantine pests | — |
| Burkina Faso | Present | — |
| Cuba | Absent | — |
| Ecuador | Quarantine pests | — |
| Egypt | Abesent | 2018 |
| Indonesia | Absent | — |
| Israel | Quarantine pest | 2009 |
| Sri Lanka | Quarantine pests | — |
| Madagascar | Quarantine pests | — |
| Malaysia | Quarantine pests | — |
Distribution (3 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Afghanistan | Present | — |
| Greece | Present | — |
| Turkey | Present | — |
Genomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_018324325.1 | Complete Genome | 6 | 6299 | 6299 | - |
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ASM1832432v1 |
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| GCF_000934645.1 | Contig | 6 | 498 | 498 | - |
|
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ASM93464v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR18901614 | - | - | - | 20365689 | - | |
|
PRJNA831271 SRX14979890 SRP371880 GSM6062261: Ptab0_1; Pseudomonas amygdali pv. tabaci; RNA-Seq 11528 {'strain': '11528', 'pathovar': 'tabaci', 'source_name': 'bacterial cells', 'tissue/sample type': 'bacterial cells'} |
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| SRR18901613 | - | - | - | 17480623 | - | |
|
PRJNA831271 SRX14979891 SRP371880 GSM6062262: Ptab0_2; Pseudomonas amygdali pv. tabaci; RNA-Seq 11528 {'strain': '11528', 'pathovar': 'tabaci', 'source_name': 'bacterial cells', 'tissue/sample type': 'bacterial cells'} |
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| SRR18901612 | - | - | - | 18658683 | - | |
|
PRJNA831271 SRX14979892 SRP371880 GSM6062263: Ptab0_3; Pseudomonas amygdali pv. tabaci; RNA-Seq 11528 {'strain': '11528', 'pathovar': 'tabaci', 'source_name': 'bacterial cells', 'tissue/sample type': 'bacterial cells'} |
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Literature
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