Rhizobium rhizogenes
TaxID: 359
Basic Information
Rhizobium rhizogenes
Hairy Root
Rhizobium rhizogenes (formerly Agrobacterium rhizogenes) is a Gram-negative soil bacterium that produces hairy root disease in dicotyledonous plants. R. rhizogenes induces the formation of proliferative multiple-branched adventitious roots at the site of infection, so-called 'hairy roots'. It also induces galls. In the rhizosphere, plants may suffer from wounds by soil pathogens or other sources. This leads to the secretion of phenolic compounds like acetosyringone which have chemotactic effects that attract the bacteria. Under such conditions, certain bacterial genes are turned on leading to the transfer of its T-DNA from its root-inducing plasmid (Ri plasmid) into the plant through the wound. After integration and expression, in vitro or under natural conditions, the hairy root phenotype is observed, which typically includes overdevelopment of a root system that is not completely geotropic, and altered (wrinkled) leaf morphology, if leaves are present. R. rhizogenes also propagates as a seed-borne pathogen.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Alphaproteobacteria
Hyphomicrobiales
Rhizobiaceae
Rhizobium
rhizogenes
nan
Species
nan
k__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;g__Rhizobium;s__Rhizobium rhizogenes
nan
Prokaryotes
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (7 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Malus domestica | Host |
| Prunus avium | Host |
| Prunus domestica | Host |
| Prunus dulcis | Host |
| Prunus persica | Host |
| Rosa | Host |
| Rubus idaeus | Host |
Quarantine Status (13 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Bahrain | A1 list | 2003 |
| Guatemala | Absent | — |
| India | Quarantine pests | — |
| Jordan | A2 list | 2013 |
| Sri Lanka | Quarantine pests | — |
| Mexico | Quarantine pests | 2018 |
| Nicaragua | Absent | — |
| Nepal | Quarantine pests | — |
| Panama | Quarantine pests | — |
| Peru | Absent | — |
Distribution (6 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Australia | Present | |
| Bulgaria | Present | — |
| France | Present | — |
| Italy | Present | — |
| Japan | Present | — |
| United States of America | Present |
Genomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_001649535.1 | Chromosome | 5 | 3003 | 3003 | - |
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ASM164953v1 |
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| GCF_000705135.2 | Contig | 7 | 1468 | 1468 | - |
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Draft genome assembly of Agrobacterium rhizogenes ATCC15834 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR23016228 | - | - | - | 35721154 | not applicable | |
|
PRJNA921868 SRX18971886 SRP416479 general dRNA-Seq of BV2 dRNA-Seq C16/80 {'host': 'Apple', 'strain': 'C16/80', 'condition': 'MGYS_stationary', 'collected_by': 'Lucas Waldburger', 'tex_treatment': 'FALSE', 'biosamplemodel': 'Microbe, viral or environmental', 'isolation_source': 'environmental'} |
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| SRR23016225 | - | - | - | 32156317 | not applicable | |
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PRJNA921868 SRX18971889 SRP416479 general dRNA-Seq of BV2 dRNA-Seq C16/80 {'host': 'Apple', 'strain': 'C16/80', 'condition': 'MOPS_succinate', 'collected_by': 'Lucas Waldburger', 'tex_treatment': 'TRUE', 'biosamplemodel': 'Microbe, viral or environmental', 'isolation_source': 'environmental'} |
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| SRR23016222 | - | - | - | 5748699 | not applicable | |
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PRJNA921868 SRX18971892 SRP416479 general dRNA-Seq of BV2 dRNA-Seq C16/80 {'host': 'Apple', 'strain': 'C16/80', 'condition': 'MGYS_exponential', 'collected_by': 'Lucas Waldburger', 'tex_treatment': 'TRUE', 'biosamplemodel': 'Microbe, viral or environmental', 'isolation_source': 'environmental'} |
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DNA Barcodes (3 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBBAC6107-15 | - | COI-5P | 666 | - | - | - | |
| GBBAC1448-15 | - | COI-5P | 729 | - | - | - | |
| BACRE6678-25 | - | COI-5P | 703 | Unrecoverable | - | - |
Literature
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