Rhizobium rhizogenes

TaxID: 359

Basic Information

Rhizobium rhizogenes

Hairy Root

Rhizobium rhizogenes (formerly Agrobacterium rhizogenes) is a Gram-negative soil bacterium that produces hairy root disease in dicotyledonous plants. R. rhizogenes induces the formation of proliferative multiple-branched adventitious roots at the site of infection, so-called 'hairy roots'. It also induces galls. In the rhizosphere, plants may suffer from wounds by soil pathogens or other sources. This leads to the secretion of phenolic compounds like acetosyringone which have chemotactic effects that attract the bacteria. Under such conditions, certain bacterial genes are turned on leading to the transfer of its T-DNA from its root-inducing plasmid (Ri plasmid) into the plant through the wound. After integration and expression, in vitro or under natural conditions, the hairy root phenotype is observed, which typically includes overdevelopment of a root system that is not completely geotropic, and altered (wrinkled) leaf morphology, if leaves are present. R. rhizogenes also propagates as a seed-borne pathogen.

from Wikipedia

Taxonomic Information

Bacteria

Pseudomonadota

Alphaproteobacteria

Hyphomicrobiales

Rhizobiaceae

Rhizobium

rhizogenes

nan

Photos (5 photos)

Rhizobium rhizogenes
c
(c) Livan@BY-NC
Rhizobium rhizogenes
c
(c) Livan@BY-NC
Rhizobium rhizogenes
c
(c) Livan@BY-NC
Rhizobium rhizogenes
c
(c) Livan@BY-NC
Rhizobium rhizogenes
c
(c) Livan@BY-NC

Morphological Features

No morphological description available.

Host Plants (7 host plants)

Data sources: EPPO Global Database and relevant literature.

Quarantine Status (13 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country Status Year Added
Bahrain A1 list 2003
Guatemala Absent —
India Quarantine pests —
Jordan A2 list 2013
Sri Lanka Quarantine pests —
Mexico Quarantine pests 2018
Nicaragua Absent —
Nepal Quarantine pests —
Panama Quarantine pests —
Peru Absent —
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Distribution (6 countries)

Data Sources: EPPO Global Database and GBIF.

6
Present
0
Absent
0
Unknown/Other
Country Status State
Australia Present
Bulgaria Present —
France Present —
Italy Present —
Japan Present —
United States of America Present

Genomes (2 records)

Data source: NCBI.

Assembly Accession Assembly Level Genome Size(Mb) Contig N50(Kb) Scaffold N50(Kb) BUSCO% Downloads Actions
GCF_001649535.1 Chromosome 5 3003 3003 -
GCF_000705135.2 Contig 7 1468 1468 -

Transcriptomes (3 records)

Data source: NCBI.

Run ID Tissue Developmental Stage Sex Read Count Location Actions
SRR23016228 - - - 35721154 not applicable
SRR23016225 - - - 32156317 not applicable
SRR23016222 - - - 5748699 not applicable

DNA Barcodes (3 records)

View all

Data source: BOLD.

Process ID BIN Marker Length Country Date Lat/Lon Sequence
GBBAC6107-15 - COI-5P 666 - - -
GBBAC1448-15 - COI-5P 729 - - -
BACRE6678-25 - COI-5P 703 Unrecoverable - -

Literature