Setaria viridis
TaxID: 4556
Basic Information
Setaria viridis
Bristlegrass, Foxtail, Green Bristlegrass
Setaria viridis is a species of grass known by many common names, including green foxtail, green bristlegrass, and wild foxtail millet. It is sometimes considered a subspecies of Setaria italica. It is native to Eurasia, but it is known on most continents as an introduced species and is closely related to Setaria faberi, a noxious weed. It is a hardy grass which grows in many types of urban, cultivated, and disturbed habitat, including vacant lots, sidewalks, railroads, lawns, and at the margins of fields. It is the wild antecedent of the crop foxtail millet. This is an annual grass with decumbent or erect stems growing up to a meter long, and known to reach two meters or more at times. The leaf blades are up to 40 centimeters long and 2.5 wide and glabrous. The inflorescence is a dense, compact, spikelike panicle up to 20 centimeters long, growing erect or sometimes nodding at the tip only. Spikelets are 1.8 C2.2 mm long. Each is subtended by up to three stiff bristles. Its fertile lemmas are finely cross-wrinkled. Setaria viridis is often confused with S. faberi, (Chinese or Giant Foxtail), which has sparse, soft hairs on the leaves and a nodding inflorescence. Setaria viridis is closely related to S. italica (Foxtail Millet), which has larger spikelets about 3 mm long and usually smooth, shiny upper lemmas. Foxtail Millet was cultivated in China by 2700 BC and during the Stone Age in Europe. Setaria viridis has been proposed as a model to study C4 photosynthesis and related bioenergy grasses. It has a short life cycle (6 C8 weeks), is transformable and is currently being sequenced. Genetic resources are currently being developed by a number of groups. A method to break the prolonged seed dormancy has been discovered recently and all these could contribute towards making S. viridis a choice monocot genetic model system.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Poales
Poaceae
Setaria
viridis
Unclassified
Species
nan
d__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Poales;f__Poaceae;g__Setaria;s__Setaria viridis
nan
Weeds
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (3 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (98 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Afghanistan | Present | — |
| Albania | Present | — |
| Algeria | Present | — |
| Andorra | Present | — |
| Argentina | Present | — |
| Armenia | Present | — |
| Australia | Present | — |
| Austria | Present | — |
| Azerbaijan | Present | — |
| Belgium | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_005286985.2 | Chromosome | 397 | 21048 | 21048 | 0.992034316% |
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Setaria_viridis_v4.0 |
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Transcriptomes (6 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR34514723 | Leaf | Seedling | not collected | 23817974 | not collected | |
|
PRJNA768345 SRX29658403 SRP340025 weed Q7-1 Total mRNA was isolated from young leaf tissues of wild and landrace accession using TRIzol reagent (Thermo Fisher Scientific). RNA-seq libraries were prepared for paired-end sequencing on an MGISEQ-2000 platform, producing 150-bp paired-end reads. not collected {'age': 'not collected', 'sex': 'not collected', 'temp': 'not collected', 'tissue': 'Leaf', 'disease': 'not collected', 'ecotype': 'not collected', 'isolate': 'Q7', 'lat_lon': 'not collected', 'cultivar': 'not collected', 'genotype': 'not collected', 'cell_line': 'not collected', 'cell_type': 'not collected', 'dev_stage': 'Seedling', 'phenotype': 'not collected', 'treatment': 'not collected', 'population': 'not collected', 'sample_type': 'not collected', 'collected_by': 'not collected', 'geo_loc_name': 'not collected', 'disease_stage': 'not collected', 'biosamplemodel': 'Plant', 'collection_date': 'not collected', 'growth_protocol': 'not collected', 'height_or_length': 'not collected', 'isolation_source': 'not collected', 'specimen_voucher': 'not collected', 'culture_collection': 'not collected', 'biomaterial_provider': 'Xianmin Diao'} |
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| SRR34514722 | Leaf | Seedling | not collected | 23790870 | not collected | |
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PRJNA768345 SRX29658404 SRP340025 weed Q7-2 Total mRNA was isolated from young leaf tissues of wild and landrace accession using TRIzol reagent (Thermo Fisher Scientific). RNA-seq libraries were prepared for paired-end sequencing on an MGISEQ-2000 platform, producing 150-bp paired-end reads. not collected {'age': 'not collected', 'sex': 'not collected', 'temp': 'not collected', 'tissue': 'Leaf', 'disease': 'not collected', 'ecotype': 'not collected', 'isolate': 'Q7', 'lat_lon': 'not collected', 'cultivar': 'not collected', 'genotype': 'not collected', 'cell_line': 'not collected', 'cell_type': 'not collected', 'dev_stage': 'Seedling', 'phenotype': 'not collected', 'treatment': 'not collected', 'population': 'not collected', 'sample_type': 'not collected', 'collected_by': 'not collected', 'geo_loc_name': 'not collected', 'disease_stage': 'not collected', 'biosamplemodel': 'Plant', 'collection_date': 'not collected', 'growth_protocol': 'not collected', 'height_or_length': 'not collected', 'isolation_source': 'not collected', 'specimen_voucher': 'not collected', 'culture_collection': 'not collected', 'biomaterial_provider': 'Xianmin Diao'} |
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| SRR34514721 | Leaf | Seedling | not collected | 23817974 | not collected | |
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PRJNA768345 SRX29658405 SRP340025 weed Q7-3 Total mRNA was isolated from young leaf tissues of wild and landrace accession using TRIzol reagent (Thermo Fisher Scientific). RNA-seq libraries were prepared for paired-end sequencing on an MGISEQ-2000 platform, producing 150-bp paired-end reads. not collected {'age': 'not collected', 'sex': 'not collected', 'temp': 'not collected', 'tissue': 'Leaf', 'disease': 'not collected', 'ecotype': 'not collected', 'isolate': 'Q7', 'lat_lon': 'not collected', 'cultivar': 'not collected', 'genotype': 'not collected', 'cell_line': 'not collected', 'cell_type': 'not collected', 'dev_stage': 'Seedling', 'phenotype': 'not collected', 'treatment': 'not collected', 'population': 'not collected', 'sample_type': 'not collected', 'collected_by': 'not collected', 'geo_loc_name': 'not collected', 'disease_stage': 'not collected', 'biosamplemodel': 'Plant', 'collection_date': 'not collected', 'growth_protocol': 'not collected', 'height_or_length': 'not collected', 'isolation_source': 'not collected', 'specimen_voucher': 'not collected', 'culture_collection': 'not collected', 'biomaterial_provider': 'Xianmin Diao'} |
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| SRR37016237 | - | - | - | 25545708 | missing | |
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PRJNA1386978 SRX31963814 SRP668819 general Setaria viridis A10 WUE Plate7 Gene Expression Profiling A10 WUE {'cultivar': 'A10 WUE', 'biosamplemodel': 'MIGS.eu'} |
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| SRR37016236 | - | - | - | 33439770 | missing | |
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PRJNA1386340 SRX31963815 SRP668820 general Setaria viridis A10 WUE Plate7 Gene Expression Profiling A10 WUE {'cultivar': 'A10 WUE', 'biosamplemodel': 'MIGS.eu'} |
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| SRR37016268 | - | - | - | 31621796 | missing | |
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PRJNA1386252 SRX31963816 SRP668821 general Setaria viridis A10 WUE Plate7 Gene Expression Profiling A10 WUE {'cultivar': 'A10 WUE', 'biosamplemodel': 'MIGS.eu'} |
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DNA Barcodes (62 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| WAT155-12 | - | rbcLa | 553 | Canada | 2007-07-24 | - | |
| WAT155-12 | - | ITS2 | 342 | Canada | 2007-07-24 | - | |
| WAT117-12 | - | rbcLa | 553 | Canada | 2007-07-18 | - | |
| WAT117-12 | - | ITS2 | 342 | Canada | 2007-07-18 | - | |
| WAT105-12 | - | rbcLa | 553 | Canada | 2006-08-31 | - | |
| WAT105-12 | - | ITS2 | 342 | Canada | 2006-08-31 | - | |
| WAT079-12 | - | rbcLa | 553 | Canada | 2007-08-08 | - | |
| WAT079-12 | - | ITS2 | 342 | Canada | 2007-08-08 | - | |
| VEMSH251-13 | - | matK | 773 | Canada | 2012-06-28 | 45.535, -73.149 | |
| SDH3004-15 | - | rbcLa | 552 | United States | 2010-08-04 | 33.28186, -116.6175 |
Literature
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