Phytophthora rubi
TaxID: 129364
Basic Information
Phytophthora rubi
Root Rot of Raspberry, bringebærrotråte
Phytophthora rubi is the principal cause of root rot in red raspberry. Originally classified as a variant of P. fragariae some now consider it a distinct species. This organism has been isolated from raspberries in Europe, North America, Chile, and many other countries around the world. It is best controlled through a combination of good management practices and use of resistant varieties. It is a significant cause of crop loss in poor draining soils.
from Wikipedia
Taxonomic Information
Eukaryota
Oomycota
Peronosporomycetes
Peronosporales
Peronosporaceae
Phytophthora
rubi
Undefined
Species
nan
d__Eukaryota;p__Oomycota;c__Peronosporomycetes;o__Peronosporales;f__Peronosporaceae;g__Phytophthora;s__Phytophthora rubi
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (3 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Rubus idaeus | Host |
| Rubus occidentalis | Host |
| Rubus x neglectus | Host |
Quarantine Status (13 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| China | Quarantine pests | 2021 |
| Ecuador | Quarantine pests | — |
| EPPO A2 | Present | — |
| Croatia | Quarantine pests | — |
| Jordan | A2 list | 2013 |
| Morocco | Quarantine pest | 2018 |
| Mexico | Quarantine pests | 2018 |
| North Macedonia | Present | — |
| Norway | Quarantine pests | 2012 |
| Peru | Absent | — |
Distribution (22 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Australia | Present | |
| Austria | Present | — |
| Belgium | Present | — |
| Canada | Absent | |
| Canada | Present | |
| Switzerland | Present | — |
| Chile | Present | — |
| Czechia | Present | — |
| Germany | Present | — |
| Denmark | Absent | — |
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000687305.2 | Scaffold | 78 | 40 | 84 | - |
|
|
|
P.frag2.0 |
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Transcriptomes (5 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| ERR12726629 | - | 7dpi | - | 45839278 | - | |
|
PRJEB73348 ERX12100562 ERP158147 general Illumina HiSeq 1500 paired end sequencing SCRP333 {'isolate': 'SCRP333', 'dev_stage': '7dpi', 'sample name': 'TIBARep2', 'tissue_type': 'mycelia', 'insdc status': 'public', 'submitter id': 'TIBARep2', 'collection date': '2022', 'scientific_name': 'Phytophthora rubi', 'ena first public': '2025-12-01', 'insdc center name': 'JHI', 'geographic location (country and/or sea)': 'United Kingdom'} |
||||||
| ERR12726630 | - | 7dpi | - | 40429268 | - | |
|
PRJEB73348 ERX12100563 ERP158147 general Illumina HiSeq 1500 paired end sequencing SCRP333 {'isolate': 'SCRP333', 'dev_stage': '7dpi', 'sample name': 'TIBARep3', 'tissue_type': 'mycelia', 'insdc status': 'public', 'submitter id': 'TIBARep3', 'collection date': '2022', 'scientific_name': 'Phytophthora rubi', 'ena first public': '2025-12-01', 'insdc center name': 'JHI', 'geographic location (country and/or sea)': 'United Kingdom'} |
||||||
| ERR12726625 | - | 7dpi | - | 43778147 | - | |
|
PRJEB73348 ERX12100558 ERP158147 general Illumina HiSeq 1500 paired end sequencing SCRP333 {'isolate': 'SCRP333', 'dev_stage': '7dpi', 'sample name': 'IBARep2', 'tissue_type': 'mycelia', 'insdc status': 'public', 'submitter id': 'IBARep2', 'collection date': '2022', 'scientific_name': 'Phytophthora rubi', 'ena first public': '2025-12-01', 'insdc center name': 'JHI', 'geographic location (country and/or sea)': 'United Kingdom'} |
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| SRR10207405 | - | - | - | 6548236 | - | |
|
PRJNA396163 SRX6927313 SRP157056 RNA-Seq of Phytophthora rubi Sequencing of RNA extracted from Phytophthora rubi mycelium 4671V8 {'host': 'Rubus idaeus', 'strain': '4671V8', 'sample_type': 'Culture', 'biosamplemodel': 'Microbe, viral or environmental'} |
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| SRR10207404 | - | - | - | 6726639 | - | |
|
PRJNA396163 SRX6927314 SRP157056 RNA-Seq of Phytophthora rubi Sequencing of RNA extracted from Phytophthora rubi mycelium Pr4671PB {'host': 'Rubus idaeus', 'strain': 'Pr4671PB', 'sample_type': 'Culture', 'biosamplemodel': 'Microbe, viral or environmental'} |
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Literature
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