Xanthomonas albilineans
TaxID: 29447
Basic Information
Xanthomonas albilineans
Leaf Scald of Sugarcane
Xanthomonas albilineans is a species of gram-negative bacteria. It causes leaf scald in sugarcane and is the source of the phytoxin and antibiotic albicidin. These bacteria live in the xylem of sugarcane.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Lysobacterales
Lysobacteraceae
Xanthomonas
albilineans
nan
Species
nan
k__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas albilineans
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (1 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Saccharum officinarum | Host |
Quarantine Status (15 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Burkina Faso | Present | — |
| China | Quarantine pests | 2021 |
| Cuba | Present | — |
| Egypt | Abesent | 2018 |
| Iran | A1 list | 2018 |
| Morocco | Quarantine pest | 2018 |
| Mexico | Quarantine pests | 2018 |
| Malaysia | Quarantine pests | — |
| New Caledonia | Quarantine pests | — |
| Nicaragua | Absent | — |
Distribution (54 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | |
| Benin | Present | — |
| Burkina Faso | Present | — |
| Brazil | Present | |
| Barbados | Present | — |
| Cambodia | Present | — |
| China | Present | |
| Côte d'Ivoire | Present | — |
| Cameroon | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_009931595.1 | Complete Genome | 3 | 3724 | 3724 | - |
|
|
|
ASM993159v1 |
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| GCF_000962915.1 | Scaffold | 3 | 167 | 3636 | - |
|
|
|
Xal-HVO_082-G1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR19025912 | - | - | - | 1305898 | Brazil: Sao Paulo | |
|
PRJNA792816 SRX15097690 SRP373065 bacteria RNASeq Xa26: in vitro Total RNA prepared from in vitro grown bacteria was depleted for the ribosomal RNA using sequential primers. Xa26 {'host': 'sugarcane', 'strain': 'Xa26', 'lat_lon': '21.28 S 47.00 W', 'env_medium': 'pant leaves', 'geo_loc_name': 'Brazil: Sao Paulo', 'num_replicons': 'one', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '2010', 'env_broad_scale': 'agricultural plantation', 'env_local_scale': 'sugarcane fields', 'ref_biomaterial': 'http://dx.doi.org/10.1094/PDIS-07-13-0762-RE', 'isol_growth_condt': 'http://dx.doi.org/10.1094/PDIS-07-13-0762-RE'} |
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| SRR24142416 | - | - | - | 34251533 | missing | |
|
PRJNA954724 SRX19940849 SRP432174 bacteria GSM7164223: Xalb_totalRNASeq_Rep1; Xanthomonas albilineans; RNA-Seq CFBP7063 {'strain': 'CFBP7063', 'genotype': 'WT', 'cell type': 'bacteria', 'source_name': 'bacteria'} |
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| SRR24142415 | - | - | - | 35955435 | missing | |
|
PRJNA954724 SRX19940850 SRP432174 bacteria GSM7164224: Xalb_totalRNASeq_Rep2; Xanthomonas albilineans; RNA-Seq CFBP7063 {'strain': 'CFBP7063', 'genotype': 'WT', 'cell type': 'bacteria', 'source_name': 'bacteria'} |
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Literature
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