Fusarium avenaceum
TaxID: 40199
Basic Information
Fusarium avenaceum
Stalk Rot of Maize, sädslemmögel
Gibberella avenacea is a fungus that infects plants.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Hypocreales
Nectriaceae
Fusarium
avenaceum
nan
Species
nan
k__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__Fusarium avenaceum
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (7 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (48 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | — |
| Austria | Present | — |
| Belgium | Present | — |
| Bolivia (Plurinational State of) | Present | — |
| Brazil | Present | — |
| Canada | Present | — |
| Switzerland | Present | — |
| China | Present | — |
| Germany | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000769215.1 | Scaffold | 41 | 1301 | 1436 | - |
|
|
|
Fave_05001 |
|||||||
Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR32238803 | - | - | - | 19894118 | Canada: Ottawa | |
|
PRJNA1219543 SRX27578788 SRP561734 fungi RNA-seq of Fusarium avenaceum FaLH03 cultured for 3 days on GYEP Fungal mycelium was harvested after 2 days of growth on GYEP. RNA was extracted using an RNAeasy Plant & Fungal Mini Kit (Qiagen Inc) according to manufacturer's instructions. RNA was quantified using Nanodrop and Bioanalyzer prior to Illumina HiSeq 2500 PE sequencing. FaLH03 {'strain': 'FaLH03', 'sample_type': 'tissue sample', 'collected_by': 'Whynn Bosnich and Danielle Schneiderman', 'geo_loc_name': 'Canada: Ottawa', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2014', 'isolation_source': 'harvested after 3 days growth on GYEP'} |
||||||
| SRR32238802 | - | - | - | 28939038 | Canada: Ottawa | |
|
PRJNA1219543 SRX27578789 SRP561734 fungi RNA-seq of Fusarium avenaceum FaLH03 cultured for 3 days on GYEP followed by 4 days acidic nitrogen rich medium Fungal mycelium was harvested after 3 days of growth on GYEP followed by 4 days of growth in an acidic, nitrogen rich medium. RNA was extracted using an RNAeasy Plant & Fungal Mini Kit (Qiagen Inc) according to manufacturer's instructions. RNA was quantified using Nanodrop and Bioanalyzer prior to Illumina HiSeq 2500 PE sequencing. FaLH03 {'strain': 'FaLH03', 'sample_type': 'tissue sample', 'collected_by': 'Whynn Bosnich and Danielle Schneiderman', 'geo_loc_name': 'Canada: Ottawa', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2014', 'isolation_source': 'harvested after 3 days growth GYEP followed by 4 days acidic high nitrogen medium'} |
||||||
| SRR32238801 | - | - | - | 25767579 | Canada: Ottawa | |
|
PRJNA1219543 SRX27578790 SRP561734 fungi RNA-seq of Fusarium avenaceum FaLH03 cultured for 3 days on GYEP followed by 4 days alkaline nitrogen poor medium Fungal mycelium was harvested after 3 days of growth on GYEP followed by 4 days of growth in an alkaline, nitrogen poor medium. RNA was extracted using an RNAeasy Plant & Fungal Mini Kit (Qiagen Inc) according to manufacturer's instructions. RNA was quantified using Nanodrop and Bioanalyzer prior to Illumina HiSeq 2500 PE sequencing. FaLH03 {'strain': 'FaLH03', 'sample_type': 'tissue sample', 'collected_by': 'Whynn Bosnich and Danielle Schneiderman', 'geo_loc_name': 'Canada: Ottawa', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2014', 'isolation_source': 'harvested after 3 days growth GYEP followed by 4 days alkaline low nitrogen medium'} |
||||||
DNA Barcodes (42 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| HY096-07 | - | COI-5P | 687 | Germany | 1926-01-01 | 52.502, 13.284 | |
| HY061-07 | - | COI-5P | 604 | Germany | 1926-01-01 | 52.502, 13.284 | |
| GBHYP9705-13 | - | ITS | 468 | - | - | - | |
| GBHYP8798-13 | - | ITS | 477 | - | - | - | |
| GBHYP8776-13 | - | ITS | 493 | - | - | - | |
| GBHYP8356-13 | - | ITS | 442 | - | - | - | |
| GBHYP7708-13 | - | ITS | 530 | - | - | - | |
| GBHYP7707-13 | - | ITS | 530 | - | - | - | |
| GBHYP7706-13 | - | ITS | 530 | - | - | - | |
| GBHYP7705-13 | - | ITS | 520 | - | - | - |
Literature
Fetching literature from NCBI PubMed...
Failed to fetch literature