Burkholderia cepacia

TaxID: 292

Basic Information

Scientific Name *

Common Name

Sour Skin of Onion

Introduction

Burkholderia cepacia complex (BCC) is a species complex consisting of Burkholderia cepacia and at least 20 different biochemically similar species of Gram-negative bacteria. They are catalase-producing and lactose-nonfermenting. Members of BCC are opportunistic human pathogens that most often cause pneumonia in immunocompromised individuals with underlying lung disease (such as cystic fibrosis or chronic granulomatous disease). Patients with sickle-cell haemoglobinopathies are also at risk. The species complex also attacks young onion and tobacco plants, and displays a remarkable ability to digest oil.

from Wikipedia

Taxonomic Information

Domain/Kingdom

Bacteria

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Species

cepacia

Subspecies

nan

Photos (0 photos)

No photos available.

Morphological Features

No morphological description available.

Host Plants (0 host plants)

Data sources: EPPO Global Database and relevant literature.

No host plants available.

Quarantine Status (5 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country	Status	Year Added
Jamaica	Quarantine pests	—
Jordan	A2 list	2013
Mexico	Quarantine pests	—
Nepal	Quarantine pests	—
Sudan	Quarantine pests	—

Distribution (15 countries)

Data Sources: EPPO Global Database and GBIF.

15

Present

0

Absent

0

Unknown/Other

Country	Status	State
Australia	Present	—
Canada	Present	—
China	Present	—
Colombia	Present	—
United Kingdom	Present	—
Indonesia	Present	—
India	Present	—
Iran	Present	—
Sri Lanka	Present	—
Mexico	Present	—

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Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Download CSV

Genomes (3 records)

Data source: NCBI.

Assembly Accession	Assembly Level	Genome Size(Mb)	Contig N50(Kb)	Scaffold N50(Kb)	BUSCO%	Downloads
GCF_001718395.1	Complete Genome	7	3728	3728	-	FASTA GFF3
Assembly Name ASM171839v1
GCF_000756845.1	Scaffold	7	2068	2068	-	FASTA GFF3
Assembly Name BHW_1
GCF_000724975.1	Contig	8	560	560	-	FASTA GFF3
Assembly Name ASM72497v1

Transcriptomes (3 records)

Data source: NCBI.

Run ID	Tissue	Developmental Stage	Sex	Read Count	Location	Actions
ERR5168239	-	-	-	35212698	-	Download NCBI
BioProject PRJEB42574 Experiment ID ERX4973160 Study ID ERP126457 Category general Title Raw reads: Burkholderia_cepacia_ABIP441_RNA-seq_control_condition_rep3 Design Description unspecified Sample Attributes {'organism': 'Burkholderia cepacia', 'ena-last-update': '2022-10-05', 'scientific_name': 'Burkholderia cepacia', 'ena-first-public': '2022-10-05'}
ERR5167526	-	-	-	36457478	-	Download NCBI
BioProject PRJEB42574 Experiment ID ERX4972447 Study ID ERP126457 Category general Title Raw reads: Burkholderia_cepacia_ABIP441_RNA-seq_control_condition_rep1 Design Description unspecified Sample Attributes {'external id': 'SAMEA7845154', 'sample name': 'BCEP_VSG1', 'insdc status': 'public', 'submitter id': 'BCEP_VSG1', 'ena-last-update': '2022-10-05', 'ena-first-public': '2022-10-05', 'insdc center name': 'Institut de Recherche pour le Developpement', 'insdc last update': '2022-10-05T00:19:14Z', 'insdc center alias': 'IRD', 'insdc first public': '2022-10-05T00:19:14Z'}
SRR35900972	-	-	-	7054152	China:Tai'an	Download NCBI
BioProject PRJNA1354655 Experiment ID SRX30950262 Study ID SRP637708 Category general Title RNA-Seq of Burkholderia cepacia Design Description normal Strain Chrysanthemum soil Sample Attributes {'isolate': 'Chrysanthemum soil', 'sample_type': 'cell culture', 'geo_loc_name': "China:Tai'an", 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2024-11'}

DNA Barcodes (12 records)

View all

Data source: BOLD.

Process ID	BIN	Marker	Length	Country	Date	Lat/Lon	Sequence
GBBAC4474-15	-	COI-5P	663	United States	2013-06-06	38.82081, -96.33162	ATGTTCGGCAAACTCACACTCTCGGCGATCCCGTTCGATCAGCCCATCATCATGGGGGCCGGCGCCTTCATGGGTCTGGTCGTGCTGGGCATTCTCGCCGCGCTGACGATCACCGGCCGCTGGAAATGGCTGTGGACGGAATGGCTGACCACGGTCGACCACAAGAGACTCGGCGTGATGTACATCATCGTCGCGCTGATCATGCTGCTGCGCGGCTTCGCCGACGCGATCATGATGCGCATGCAACTCGCGCTCGCGTACAACGCGCCCGGCTACCTGCCGCCGCACCACTATGACCAGATCTTCACGGCGCACGGCGTGATCATGATCTTCTTCATGGCGATGGTGTTCATGGTCGGCCTGATGAACCTGGTCGTGCCGCTGCAGATCGGCGCGCGCGACGTCGCGTTCCCGTTCATCAACTCGCTGTCGTTCTGGATGACGGCGGTCAGCGCGATCCTGATCAACCTGTCGCTCGTGATCGGCGAATTCGCGCAGACGGGCTGGCTCGCGTACCCGCCGCTGTCGGAGCTGCAGTTCAGTCCGGGGGTAGGGGTCGACTACTACCTGTGGGCGCTGCAGATCTCGGGCGTCGGCACGCTGCTGACCGGCGTGAACTTCTTCGTGACGATCATCAAGATGCGCGCGCCGGGCATGACGCTG
GBBAC4472-15	-	COI-5P	663	-	-	-	ATGTTCGGCAAACTCACACTTTCGGCGATCCCGTTCGATCAGCCCATCATCATGGGGGCCGGCGCCTTCATGGGGCTGGTCGTGCTGGGCATTCTCGCCGCGCTGACGATCACCGGCCGGTGGAAATGGCTGTGGACGGAATGGCTGACCACGGTCGACCACAAGAGACTCGGCGTGATGTACATCATCGTCGCGCTGATCATGCTGCTGCGCGGCTTCGCCGACGCGATCATGATGCGCATGCAACTCGCGCTCGCGTACAACGCGCCCGGCTACCTGCCGCCGCACCACTATGACCAGATCTTCACGGCACACGGCGTGATCATGATCTTCTTCATGGCGATGGTGTTCATGGTCGGCCTGATGAACCTGGTCGTGCCGCTGCAGATCGGTGCGCGCGACGTCGCGTTCCCGTTCATCAACTCGCTGTCGTTCTGGATGACGGCGGTCAGTGCGATCTTGATCAACGTGTCGCTCGTGATCGGCGAATTCGCGCAGACGGGCTGGCTCGCATACCCGCCGCTGTCGGAGCTGCAGTTCAGTCCGGGGGTAGGGGTCGACTACTACCTGTGGGCGCTGCAGATCTCCGGCGTCGGCACGCTGCTGACCGGCGTGAATTTCTTCGTGACGATCATCAAGATGCGCGCACCCGGCATGACGCTG
GBBAC3673-15	-	COI-5P	651	-	-	-	ATGTCTAGCATCGGGCACGACGTAGCCGCGGACCACGCGCACGACGACCACGCGCACGAAGCCCCGCACGGCTGGCGTCGCTGGCTGTTCGCCACCAACCACAAGGACATCGGTACGCTGTACCTGCTGTTCTCGTTCATCATGTTCCTGTCGGGCGGCGTGATGGCGCTCGGCATCCGTGCCGAGCTGTTCGAGCCGGGCCTGCAGATCATGCGTCCGGAGTTCTTCAACGAACTCACGACGATGCACGGCCTGATCATGGTGTTCGGCGCGATCATGCCGGCCTTCGTCGGCTTCGCGAACTGGATGATTCCGCTGCAGATCGGCGCATCCGACATGGCGTTCGCGCGGATGAACAACTTCAGCTTCTGGCTGCTGCCGGTCGCGGCCGTGCTGCTGGTCGGTTCGTTCTTCGCGCCGGGCGGCGCGACGGCCGCCGGCTGGACGCTGTACGCACCGCTGTCGACGCAGATGGGCCCGGGCATGGACTTCGCGATCTTCGCGGTCCACATCATGGGCGCGTCGTCGATCATGGGCGGGATCAACATCGTCGTGACGATCCTGAACATGCGCGCACCGGGCATGACGCTGATGAAGATGCCGATGTTCGCGTGGACGTGGCTGATCACCGCGTACCTGCTGATCGCCGTG
GBBAC3671-15	-	COI-5P	651	United States	2013-06-06	38.82081, -96.33162	ATGTCTAGCATCGGGCACGACGTAGCCGCGGACCACGCGCACGACGACCACGCGCACGAAGCCCCGCACGGCTGGCGTCGCTGGCTGTTCGCCACCAACCACAAGGACATCGGTACGCTGTACCTGCTGTTCTCGTTCATCATGTTCCTGTCGGGCGGCGTGATGGCGCTCGGCATCCGTGCCGAGCTGTTCGAGCCGGGCCTGCAGATCATGCGTCCGGAGTTCTTCAACGAACTCACGACGATGCACGGCCTGATCATGGTGTTCGGCGCGATCATGCCGGCGTTCGTCGGCTTCGCGAACTGGATGATTCCGCTGCAGATCGGCGCATCCGACATGGCGTTCGCGCGGATGAACAACTTCAGCTTCTGGCTGCTGCCGGTCGCGGCCGTGCTGCTGGTCGGCTCGTTCTTCGCGCCGGGCGGCGCGACGGCTGCCGGCTGGACGCTGTACGCACCGCTGTCGACGCAGATGGGCCCGGGCATGGACTTCGCGATCTTCGCGGTCCACATCATGGGCGCATCGTCGATCATGGGCGGGATCAACATCGTCGTGACGATCCTGAACATGCGTGCACCGGGCATGACGCTGATGAAGATGCCGATGTTCGCGTGGACGTGGCTGATCACCGCGTACCTGCTGATCGCCGTG
GBBAC3653-15	-	COI-5P	651	Australia	-	-25.697338, 134.02277	ATGTCTAGCATCGGGCACGACGTAGCCGCGGACCACGCGCACGACGACCACGCGCACGAAGCCCCGCACGGCTGGCGTCGCTGGCTGTTCGCCACCAACCACAAGGACATCGGTACGCTGTACCTGCTGTTCTCGTTCATCATGTTCCTGTCGGGCGGCGTGATGGCACTCGGCATCCGTGCCGAGCTGTTCGAGCCGGGCCTGCAGATCATGCGTCCGGAGTTCTTCAACGAACTCACGACGATGCACGGCCTGATCATGGTGTTCGGCGCGATCATGCCGGCGTTCGTCGGCTTCGCGAACTGGATGATTCCGCTGCAGATCGGCGCATCCGACATGGCGTTCGCGCGGATGAACAACTTCAGCTTCTGGCTGCTGCCGGTCGCGGCCGTGCTGCTGGTCGGTTCGTTCTTCGCGCCGGGCGGCGCGACGGCGGCCGGCTGGACGCTGTACGCACCGCTGTCGACGCAGATGGGCCCGGGCATGGACTTCGCGATCTTCGCGGTCCACATCATGGGCGCATCGTCGATCATGGGCGGGATCAACATCGTCGTGACGATCCTGAACATGCGCGCACCGGGCATGACGCTGATGAAGATGCCGATGTTCGCGTGGACGTGGCTGATCACCGCGTACCTGCTGATCGCCGTG
GBBAC3550-15	-	COI-5P	651	Malaysia	-	3.671661, 114.6333	ATGTCTAGCATCGGGCACGACGTAGCCGCGGACCACGCGCACGACGACCACGCGCACGAAATGCCGCACGGCTGGCGTCGCTGGCTGTTCGCCACCAACCACAAGGACATCGGTACGCTGTACCTGTTGTTCTCGTTCATCATGTTCCTGTCGGGCGGCGTCATGGCGCTCGGCATCCGTGCCGAGCTGTTCGAGCCGGGCCTGCAGATCATGCGTCCGGAGTTCTTCAACGAACTCACGACGATGCACGGCCTGATCATGGTGTTCGGCGCGATCATGCCGGCCTTCGTCGGCTTCGCGAACTGGATGATTCCGCTGCAGATCGGCGCATCCGACATGGCGTTCGCGCGGATGAACAACTTCAGCTTCTGGCTGCTGCCGGTCGCGGCCGTGCTGCTGGTCGGCTCGTTCTTCGCGCCGGGCGGCGCGACGGCCGCCGGCTGGACGCTGTACGCACCGCTGTCGACGCAGATGGGCCCGGGCATGGACTTCGCAATCTTCGCGGTGCACATCATGGGCGCGTCGTCGATCATGGGCGGGATCAACATCGTCGTGACGATCCTGAACATGCGCGCACCGGGCATGACGCTGATGAAGATGCCGATGTTCGCATGGACCTGGCTGATCACCGCGTACCTGCTGATCGCCGTG
GBBAC3314-15	-	COI-5P	651	Malaysia	2012-12-06	3.671661, 114.6333	ATGTCTAGCATCGGGCACGACGTAGCCGCGGACCACGCGCACGACGACCACGCGCACGAAATGCCGCACGGCTGGCGGCGCTGGCTGTTCGCCACCAACCACAAGGACATCGGTACGCTGTACCTGTTGTTCTCGTTCATCATGTTCCTGTCGGGCGGCGTGATGGCGCTCGCCATCCGGGCCGAGCTGTTCGAGCCGGGCCTGCAGATCATGCGTCCGGAGTTCTTCAACGAACTCACGACGATGCACGGCCTGATCATGGTGTTCGGCGCGATCATGCCGGCGTTCGTCGGCTTCGCGAACTGGATGATTCCGCTGCAGATCGGCGCGTCCGACATGGCGTTCGCGCGGATGAACAACTTCAGCTTCTGGCTGCTGCCGGTCGCGGCCGTGCTGCTGGTCGGTTCGTTCTTCGCGCCGGGTGGCGCGACGGCCGCCGGCTGGACGCTCTACGCGCCGCTGTCGACGCAGATGGGCCCGGGCATGGACTTCGCGATCTTCGCGGTGCACATCATGGGCGCGTCGTCGATCATGGGCGGGATCAACATCGTCGTGACGATCCTGAACATGCGCGCACCGGGCATGACGCTGATGAAGATGCCGATGTTCGCATGGACGTGGCTGATCACGGCCTACCTGCTGATCGCGGTG
GBBAC155-15	-	COI-5P	1605	-	-	-	ATGTCTAGCATCGGGCACGACGTAGCCGCGGACCACGCGCACGACGACCACGCGCACGAAATGCCGCACGGCTGGCGGCGCTGGCTGTTCGCCACCAACCACAAGGACATCGGTACGCTGTACCTGCTGTTCTCGTTCATCATGTTCCTGTCGGGCGGCGTGATGGCCCTCGGCATCCGGGCCGAGCTGTTCGAGCCGGGCCTGCAGATCATGCGTCCGGAGTTCTTCAACGAACTCACGACGATGCACGGCCTGATCATGGTGTTCGGCGCGATCATGCCGGCGTTCGTCGGCTTCGCGAACTGGATGATTCCGCTGCAGATCGGCGCATCCGACATGGCGTTCGCGCGGATGAACAACTTCAGCTTCTGGCTGCTGCCCGTCGCTGCCGTGCTGCTGGTCGGTTCGTTCTTCGCGCCGGGCGGCGCGACGGCCGCCGGCTGGACGCTCTACGCGCCGCTGTCGACGCAGATGGGCCCGGGCATGGACTTCGCGATCTTCGCGGTGCACATCATGGGTGCGTCGTCGATCATGGGCGGGATCAACATCGTCGTGACGATCCTGAACATGCGCGCACCGGGCATGACGCTGATGAAGATGCCGATGTTCGCATGGACGTGGCTGATCACGGCGTACCTGCTGATCGCGGTGATGCCGGTTCTGGCGGGCGCGATCACGATGGTGCTGTTCGACCGTCACTTCGGCACGTCGTTCTTCAACGCGGCAGGCGGCGGCGACCCGGTGATGTACCAGCACATCTTCTGGTTCTTCGGCCACCCCGAGGTGTACATCATGATTCTGCCGGCGTTCGGGATCGTGTCGCAGGTGATCCCGGCGTTCGCACGCAAGACGCTGTTCGGCTATAGCTCGATGGTGTACGCGACGGCTTCGATCGCGATCCTGTCGTTCATGGTCTGGGCGCACCACATGTTCGCAACGGGCATGCCGGTCACCGGCCAGCTGTTCTTCATGTACGCGACGATGCTGATCGCGGTGCCGACGGGCGTGAAGGTGTTCAACTGGCTCGCGACGATGTGGCGCGGCTCGATGACCTTCGAAACCCCGATGCTGTTCGCGATCGGCTTCCTGTTTGTGTTCACGTTCGGCGGTCTCACGGGCCTGATGCTCGCGATGGCGCCGCTCGACATCCAGTATCACGGCACCTACTTCGTGGTGGCGCACTTCCACTACGTGCTGGTGGCCGGCTCGCTGTTCGCGCTGTTCTCGGGCTGGTACTACTGGGCGCCGAAGTGGACGGGCTGGATGTATAACGAGACGCGCGGCAAGATCCACTTCTGGTCGTCGATGATCTTCTTCAACCTGACGTTCTTCCCGATGCACTTCGTCGGTCTCGCCGGCATGCCGCGTCGTTATGCGGACTACCCGGCGCAGTTCACGGACTTCAACCAGGTCGCGACGATCGGCGCATTCGGCTTCGGCCTCGCGCAGGTGTACTTCCTGTTCGCGGTCGCGCTGCCGGCCTACCGTGGCGGCGGCGAGCTGGAAAAGGCGTCGGACAAGCCGTGGGACGGCGCGACGGGCCTCGAGTGGACGGTGCCGAGCCCGGCTCCCTTCCATACGTTCGAGCAACCGCCGCACGTCGAA
GBBAC149-15	-	COI-5P	1605	-	-	-	ATGTCTAGCATCGGGCACGACGTAGCCGCGGACCACGCGCACGACGACCACGCGCACGAAGCCCCGCACGGCTGGCGTCGCTGGCTGTTCGCCACCAACCACAAGGACATCGGTACGCTGTACCTGCTGTTCTCGTTCATCATGTTCCTGTCGGGCGGCGTGATGGCACTCGGCATCCGTGCCGAGCTGTTCGAGCCGGGCCTGCAGATCATGCGTCCGGAGTTCTTCAACGAACTCACGACGATGCACGGCCTGATCATGGTGTTCGGCGCGATCATGCCGGCGTTCGTCGGCTTCGCGAACTGGATGATTCCGCTGCAGATCGGCGCATCCGACATGGCGTTCGCGCGGATGAACAACTTCAGCTTCTGGCTGCTGCCGGTCGCGGCCGTGCTGCTGGTCGGTTCGTTCTTCGCGCCGGGCGGCGCGACGGCGGCCGGCTGGACGCTGTACGCACCGCTGTCGACGCAGATGGGCCCGGGCATGGACTTCGCGATCTTCGCGGTCCACATCATGGGCGCATCGTCGATCATGGGCGGGATCAACATCGTCGTGACGATCCTGAACATGCGCGCACCGGGCATGACGCTGATGAAGATGCCGATGTTCGCGTGGACGTGGCTGATCACCGCGTACCTGCTGATCGCCGTGATGCCGGTTCTGGCAGGCGCGATCACGATGGTGCTGTTCGACCGCCACTTCGGCACGTCGTTCTTCAACGCGGCAGGCGGCGGCGACCCGGTGATGTACCAGCACATCTTCTGGTTCTTCGGCCACCCCGAGGTGTACATCATGATTCTGCCGGCGTTCGGGATCGTGTCGCAGGTGATCCCGGCGTTCGCACGCAAGACGCTGTTCGGCTATAGCTCGATGGTGTACGCGACGGCGTCGATCGCGATCCTGTCGTTCATGGTCTGGGCGCACCACATGTTCGCCACGGGCATGCCGGTCACCGGCCAGCTGTTCTTCATGTACGCGACGATGCTGATCGCGGTGCCGACGGGCGTGAAGGTGTTCAACTGGCTCGCGACGATGTGGCGCGGCTCGATGACGTTCGAAACCCCGATGCTGTTCGCGATCGGCTTCCTGTTCGTGTTCACGTTCGGCGGCCTGACGGGCCTGATGCTCGCGATGGCGCCGCTCGACATCCAGTATCACGGCACCTACTTCGTGGTCGCGCACTTCCACTACGTGCTGGTGGCCGGCTCGCTGTTCGCGCTGTTCTCGGGCTGGTACTACTGGGCGCCGAAGTGGACGGGCTGGATGTACAACGAGACGCGCGGCAAGATCCACTTCTGGGCGTCGATGATCTTCTTCAACCTGACGTTCTTCCCGATGCACTTCGTCGGTCTCGCGGGCATGCCGCGCCGCTATGCGGACTACCCGGCGCAGTTCACGGACTTCAACCAGGTGGCGACGATCGGTGCATTCGGCTTCGGCCTCGCGCAGGTGTACTTCCTGTTCGCGGTCGCGCTGCCGGCCTACCGTGGCGGCGGCGAGCTGGAAAAGGCGTCGGACAAGCCGTGGGATGGCGCGACGGGCCTCGAGTGGACGGTCCCGAGCCCGGCTCCGTTCCACACGTTCGAGCAACCGCCGCACGTCGAA
BACRE1442-25	-	COI-5P	700	Unrecoverable	-	-	GGTGCAGTATGCGATGACGGCCATCGCGATCGGGCTGGTCGGCCTCGTATTGTCCGACCTGATGCGGCTGCAGCTCGGCTTCCCGGGCAAGTTCGCGTTCATCGACGCGAACCACTACTACCAGTTCGTCACGATGCACGGGATGATCATGGTGATCTACCTGCTGACGGCGCTGTTCCTGGGCGGCTTCGGCAACTACCTGATCCCGCTGATGCTCGGCGCGCGCGACATGGTGTTCCCGTTTCTCAACATGCTGAGCTACTGGGTCTACCTGCTGGCCGTGCTGGTGTTGGTGGCGAGCTTCTTCGTGCCGGGCGGGCCGACCGGCGCGGGCTGGACGCTGTATCCGCCGCAGGCCATCCTGCCGGGCACGCCGGGCGTCGAATGGGGCATCGTGCTGATGCTCGTGTCGCTGGCGATCTTCATCGTCGCGGCGACGATGGGCGGCCTGAATTACGTGACCACCACGCTGCAGGCACGCACGCGCGGCATGACGCTGATGCGCATGCCGCTGACGGTGTGGGGCATCTTCATCGCGACCATCATGGCGCTGCTGGCGTTTCCGGCGCTGTTCGTGTCGGCGGTGATGATGCTGTTCGACAGGACGCTCGGCACCAGTTTCTTCGTGCCGGCCGTGGTGTCGATGGGGCAGACGCTCAAGCATGCCGGCGGCAGCCCGCTGCTGTTCCAGCACCTGTTC

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Burkholderia cepacia

Basic Information

Taxonomic Information

Photos (0 photos)

Morphological Features

Host Plants (0 host plants)

Quarantine Status (5 records)

Distribution (15 countries)

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Genomes (3 records)

Transcriptomes (3 records)

DNA Barcodes (12 records)

Literature

State Information