Xanthomonas oryzae pv. oryzae
TaxID: 64187
Basic Information
Xanthomonas oryzae pv. oryzae
Blb
Xanthomonas oryzae pv. oryzae is a bacterial pathovar that causes a serious blight of rice, other grasses, and sedges.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Lysobacterales
Lysobacteraceae
Xanthomonas
oryzae
pv. oryzae
Under_Species
nan
k__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas oryzae
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
Cells are rod-shaped, Gram-negative, encapsulated, and non-spore-forming. Colonies on nutrient agar appear raised, creamy yellow, smooth, entire (with complete margins), and buttery in consistency.
Srinivas, B., Patil, V. A., Venu, E., Hariprasath, M., Purushotham, P., Rajeswari, E., Vasanth, Y., Srinivas, K., Aravind, K., Kumar, E. P., & Rajesh, K. (2024). Isolation, Purification and Identification of Xanthomonas oryzae pv. oryzae. International Journal of Economic Plants, 11(1).
Host Plants (20 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Cynodon dactylon | Host |
| Cyperus difformis | Host |
| Cyperus rotundus | Host |
| Echinochloa crus-galli | Host |
| Leersia hexandra | Host |
| Leersia japonica | Host |
| Leersia oryzoides | Host |
| Leersia sayanuka | Host |
| Leptochloa filiformis | Host |
| Oryza australiensis | Host |
Quarantine Status (61 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Argentina | Absent | 2019 |
| Armenia | Absent | — |
| Austria | Quarantine pests | 2019 |
| Azerbaijan | Absent | 2024 |
| Belgium | Unknow | 2019 |
| Burkina Faso | Present | — |
| Bulgaria | Quarantine pest ((EU) 2019/2072 Annex II A) | 2019 |
| Bahrain | Quarantine pests | 2003 |
| Belarus | Absent | — |
| Brazil | Absent | 2018 |
Distribution (47 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Australia | Present | |
| Burundi | Present | — |
| Benin | Present | — |
| Burkina Faso | Present | — |
| Bangladesh | Present | — |
| Bolivia (Plurinational State of) | Present | — |
| Cambodia | Present | — |
| China | Present | |
| Cameroon | Present | — |
| Colombia | Absent | — |
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_001466505.1 | Complete Genome | 4 | 4674 | 4674 | - |
|
|
|
ASM146650v1 |
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Transcriptomes (6 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR12235060 | - | - | - | 32087948 | - | |
|
PRJNA646633 SRX8743520 SRP272208 bacteria GSM4673178: Control 120; Xanthomonas oryzae pv. oryzae; RNA-Seq KACC10331 {'strain': 'KACC10331', 'pathovar': 'oryzae', 'treatment': 'Untreatment', 'source_name': 'Untreated Xoo 120 min'} |
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| SRR13267621 | - | - | - | 13577768 | - | |
|
PRJNA686070 SRX9697963 SRP298331 bacteria GSM4978633: control rep 1; Xanthomonas oryzae pv. oryzae; RNA-Seq IXO1088 {'phase': 'exponential phase', 'strain': 'IXO1088', 'pathovar': 'oryzae', 'treatment': 'untreated', 'source_name': 'bacteria'} |
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| SRR13267622 | - | - | - | 20200458 | - | |
|
PRJNA686070 SRX9697964 SRP298331 bacteria GSM4978634: control rep 2; Xanthomonas oryzae pv. oryzae; RNA-Seq IXO1088 {'phase': 'exponential phase', 'strain': 'IXO1088', 'pathovar': 'oryzae', 'treatment': 'untreated', 'source_name': 'bacteria'} |
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| SRR13267626 | - | - | - | 16984528 | - | |
|
PRJNA686070 SRX9697968 SRP298331 GSM4978638: 1mM As (V) treated rep 2; Xanthomonas oryzae pv. oryzae; RNA-Seq IXO1088 {'phase': 'exponential phase', 'strain': 'IXO1088', 'pathovar': 'oryzae', 'treatment': 'treated [1mM As (V)]', 'source_name': 'bacteria'} |
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| SRR13267627 | - | - | - | 26885505 | - | |
|
PRJNA686070 SRX9697969 SRP298331 GSM4978639: 0.6mM As (III) treated rep 1; Xanthomonas oryzae pv. oryzae; RNA-Seq IXO1088 {'phase': 'exponential phase', 'strain': 'IXO1088', 'pathovar': 'oryzae', 'treatment': 'treated [0.6mM As (III)]', 'source_name': 'bacteria'} |
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| SRR13267628 | - | - | - | 14757818 | - | |
|
PRJNA686070 SRX9697970 SRP298331 GSM4978640: 0.6mM As (III) treated rep 2; Xanthomonas oryzae pv. oryzae; RNA-Seq IXO1088 {'phase': 'exponential phase', 'strain': 'IXO1088', 'pathovar': 'oryzae', 'treatment': 'treated [0.6mM As (III)]', 'source_name': 'bacteria'} |
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Literature
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