Pantoea agglomerans
TaxID: 549
Basic Information
Pantoea agglomerans
Enterobacter Agglomerans
Pantoea agglomerans is a Gram-negative bacterium that belongs to the family Erwiniaceae. It was formerly called Enterobacter agglomerans, or Erwinia herbicola and is a ubiquitous bacterium commonly isolated from plant surfaces, seeds, fruit, and animal or human feces and can be found throughout a honeybee's environment. Levan produced by Pantoea agglomerans ZMR7 was reported to decrease the viability of rhabdomyosarcoma (RD) and breast cancer (MDA) cells compared with untreated cancer cells. In addition, it has high antiparasitic activity against the promastigote of Leishmania tropica.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Enterobacterales
Erwiniaceae
Pantoea
agglomerans
Unclassified
Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Pantoea;s__Pantoea agglomerans
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (6 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Argentina | Absent | — |
| Burkina Faso | Absent | — |
| Indonesia | Absent | — |
| French Polynesia | Quarantine pests | — |
| Sudan | Quarantine pests | — |
| Thailand | Quarantine pests | — |
Distribution (29 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Australia | Present | — |
| Brazil | Present | — |
| Canada | Present | — |
| Switzerland | Present | — |
| Chile | Present | — |
| China | Present | — |
| Colombia | Present | — |
| Germany | Present | — |
| Denmark | Present | — |
| Ecuador | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_001709315.1 | Complete Genome | 5 | 4182 | 4182 | - |
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ASM170931v1 |
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| GCF_000220605.1 | Contig | 4 | 267 | 267 | - |
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ASM22060v2 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR13107483 | - | - | - | 13868407 | - | |
|
PRJNA680186 SRX9552952 SRP293719 RNA-seq of Pantoea agglomerans of the vehicle control The vehicle control cells of the logarithmic growth phase were used to establish the transcriptome libraries in triplicate KSC03 {'host': 'Astragalus membranaceus var. mongholicus', 'strain': 'KSC03', 'sample_type': 'Cell culture of the logarithmic growth phase', 'geo_loc_name': 'China: Shanxi Province, Hunyuan county', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2017-10-12'} |
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| SRR13107482 | - | - | - | 14848023 | - | |
|
PRJNA680186 SRX9552953 SRP293719 RNA-seq of Pantoea agglomerans of the vehicle control The vehicle control cells of the logarithmic growth phase were used to establish the transcriptome libraries in triplicate KSC03 {'host': 'Astragalus membranaceus var. mongholicus', 'strain': 'KSC03', 'sample_type': 'Cell culture of the logarithmic growth phase', 'geo_loc_name': 'China: Shanxi Province, Hunyuan county', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2017-10-12'} |
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| SRR13107481 | - | - | - | 14409057 | - | |
|
PRJNA680186 SRX9552954 SRP293719 RNA-seq of Pantoea agglomerans of the vehicle control The vehicle control cells of the logarithmic growth phase were used to establish the transcriptome libraries in triplicate KSC03 {'host': 'Astragalus membranaceus var. mongholicus', 'strain': 'KSC03', 'sample_type': 'Cell culture of the logarithmic growth phase', 'geo_loc_name': 'China: Shanxi Province, Hunyuan county', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2017-10-12'} |
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Literature
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