Fusarium fujikuroi
TaxID: 5127
Basic Information
Fusarium fujikuroi
Pokkah Boeng
Gibberella fujikuroi is a fungal plant pathogen. It causes bakanae disease in rice seedlings. Another name is foolish seedling disease. It gets that name because the seeds can be infected, leading to disparate outcomes for the plant. There are not many diseases that initiate similar symptoms as bakanae.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Hypocreales
Nectriaceae
Fusarium
fujikuroi
Undefined
Species
nan
d__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__Fusarium fujikuroi
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (9 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Ananas | Host |
| Camellia sinensis | Host |
| Dianthus carthusianorum | Host |
| Glycine max | Host |
| Medicago sativa | Host |
| Musa | Host |
| Oryza sativa | Host |
| Saccharum officinarum | Host |
| Taxus chinensis | Host |
Quarantine Status (32 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Denmark | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Spain | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Estonia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (83 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| United Arab Emirates | Present | — |
| Argentina | Present | — |
| Australia | Present | — |
| Burundi | Present | — |
| Belgium | Present | — |
| Benin | Present | — |
| Burkina Faso | Present | — |
| Bolivia (Plurinational State of) | Present | — |
| Brazil | Present | — |
| Bhutan | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_001023035.1 | Scaffold | 43 | 75 | 1202 | - |
|
|
|
ASM102303v1 |
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Transcriptomes (5 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR27533874 | Mycelium | - | - | 20277079 | missing | |
|
PRJNA1064136 SRX23203835 SRP483486 fungi GSM8015413: dcl2 deletion, replicate 1; Fusarium fujikuroi; RNA-Seq {'tissue': 'Mycelium', 'genotype': 'delta-dcl2', 'cell line': 'dcl2 deletion strain', 'cell type': 'Hyphae', 'treatment': 'Grown in dark', 'source_name': 'Mycelium'} |
||||||
| SRR27533873 | Mycelium | - | - | 39929806 | missing | |
|
PRJNA1064136 SRX23203836 SRP483486 fungi GSM8015414: dcl2 deletion, replicate 2; Fusarium fujikuroi; RNA-Seq {'tissue': 'Mycelium', 'genotype': 'delta-dcl2', 'cell line': 'dcl2 deletion strain', 'cell type': 'Hyphae', 'treatment': 'Grown in dark', 'source_name': 'Mycelium'} |
||||||
| SRR27533872 | Mycelium | - | - | 21674473 | missing | |
|
PRJNA1064136 SRX23203837 SRP483486 fungi GSM8015415: dcl2 deletion, replicate 3; Fusarium fujikuroi; RNA-Seq {'tissue': 'Mycelium', 'genotype': 'delta-dcl2', 'cell line': 'dcl2 deletion strain', 'cell type': 'Hyphae', 'treatment': 'Grown in dark', 'source_name': 'Mycelium'} |
||||||
| DRR672553 | - | - | - | 38151270 | - | |
|
PRJDB19361 DRX652655 DRP013193 PacBio RS II sinlge-end Sequencing of KAS22024182 (KAE22250640) Functional analysis of spore formation stage specific gene populations of representative strains of F. fujikuroi pathogens TN1902R0333 {'isolate': 'TN1902R0333', 'sample_name': 'KAS22024182_TN1902R0333', 'geo_loc_name': 'South Korea', 'collection_date': '2015-06-08', 'kobic_sample_id': 'KAS22024182', 'isolation_source': 'B14 isolates from rice', 'kobic_project_id': 'KAP220308', 'kobic_release_date': '2022-05-02', 'kobic_sample_group_id': 'KASG156726', 'kobic_submission_date': '2022-05-02', 'kobic_registration_date': '2022-05-02'} |
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| DRR672554 | - | - | - | 44664908 | - | |
|
PRJDB19361 DRX652656 DRP013193 PacBio RS II sinlge-end Sequencing of KAS22024183 (KAE22250650) Functional analysis of spore formation stage specific gene populations of representative strains of F. fujikuroi pathogens TN1902R0334 {'isolate': 'TN1902R0334', 'sample_name': 'KAS22024183_TN1902R0334', 'geo_loc_name': 'South Korea', 'collection_date': '2015-06-08', 'kobic_sample_id': 'KAS22024183', 'isolation_source': 'B14 isolates from rice', 'kobic_project_id': 'KAP220308', 'kobic_release_date': '2022-05-02', 'kobic_sample_group_id': 'KASG156726', 'kobic_submission_date': '2022-05-02', 'kobic_registration_date': '2022-05-02'} |
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Literature
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