Colletotrichum nymphaeae
TaxID: 306554
Basic Information
Colletotrichum nymphaeae
Fungus
nan
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Glomerellales
Glomerellaceae
Colletotrichum
nymphaeae
nan
Species
nan
k__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Glomerellales;f__Glomerellaceae;g__Colletotrichum;s__Colletotrichum nymphaeae
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| United States of America | Quarantine pests | — |
Distribution (11 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Brazil | Present | — |
| China | Present | — |
| Germany | Present | — |
| United Kingdom | Present | — |
| Ireland | Present | — |
| Italy | Present | — |
| Japan | Present | — |
| Republic of Korea | Present | — |
| Netherlands | Present | — |
| New Zealand | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_014705085.1 | Scaffold | 50 | 39 | 138 | - |
|
|
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ASM1470508v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR27896328 | - | - | - | 26714377 | USA: Dover, Florida | |
|
PRJNA1074080 SRX23556593 SRP488573 fungi RNA-seq of Colletotrichum nymphaeae infecting strawberry RNeasy mini kit from Qiagen - catalog n0. 74104 and the Sigma Spectrum Plant total RNA kit - catalog no. STRN50 Fana_FB_Fruits_5dpi_RepB {'temp': '25 C', 'isolate': '02-179', 'lat_lon': '27.9942 N 82.2195 W', 'cultivar': 'Fana_FB_Fruits_5dpi_RepB', 'food_source': 'Fragaria x ananassa', 'geo_loc_name': 'USA: Dover, Florida', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.agriculture', 'samp_store_dur': '24 hours', 'samp_store_loc': 'minus 80', 'collection_date': '2002', 'env_broad_scale': 'Greenhouse', 'host_common_name': 'Strawberry - Florida Beauty'} |
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| SRR27896327 | - | - | - | 22224883 | USA: Dover, Florida | |
|
PRJNA1074080 SRX23556594 SRP488573 fungi RNA-seq of Colletotrichum nymphaeae infecting strawberry RNeasy mini kit from Qiagen - catalog n0. 74104 and the Sigma Spectrum Plant total RNA kit - catalog no. STRN50 Fana_FB_UnwoundedLeaves_0dpi_RepA {'temp': '25 C', 'isolate': '02-179', 'lat_lon': '27.9942 N 82.2195 W', 'cultivar': 'Fana_FB_UnwoundedLeaves_0dpi_RepA', 'food_source': 'Fragaria x ananassa', 'geo_loc_name': 'USA: Dover, Florida', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.agriculture', 'host_phenotype': 'Unwounded leaves', 'samp_store_dur': '24 hours', 'samp_store_loc': 'minus 80', 'collection_date': '2002', 'env_broad_scale': 'Greenhouse', 'host_common_name': 'Strawberry - Florida Beauty'} |
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| SRR27896326 | - | - | - | 22809657 | USA: Dover, Florida | |
|
PRJNA1074080 SRX23556595 SRP488573 fungi RNA-seq of Colletotrichum nymphaeae infecting strawberry RNeasy mini kit from Qiagen - catalog n0. 74104 and the Sigma Spectrum Plant total RNA kit - catalog no. STRN50 Fana_FB_UnwoundedLeaves_0dpi_RepB {'temp': '25 C', 'isolate': '02-179', 'lat_lon': '27.9942 N 82.2195 W', 'cultivar': 'Fana_FB_UnwoundedLeaves_0dpi_RepB', 'food_source': 'Fragaria x ananassa', 'geo_loc_name': 'USA: Dover, Florida', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.agriculture', 'host_phenotype': 'Unwounded leaves', 'samp_store_dur': '24 hours', 'samp_store_loc': 'minus 80', 'collection_date': '2002', 'env_broad_scale': 'Greenhouse', 'host_common_name': 'Strawberry - Florida Beauty'} |
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Literature
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