Xanthomonas campestris pv. raphani
TaxID: 359385
Basic Information
Xanthomonas campestris pv. raphani
Bacterial Leaf Spot of Radish
Xanthomonas campestris pv. raphani is a gram-negative, obligate aerobic bacterium that like many other Xanthomonas spp. bacteria has been found associated with plants. This organism is closely related with Xanthomonas campestris pv. campestris, but causes a non-vascular leaf spot disease that is clearly distinct from black rot of brassicas. Leaf spot diseases of brassicas were associated with X. campestris pv. armoraciae (McCulloch) Dye or X. campestris pv. raphani (White) Dye. The leaf spot isolates most commonly found in brassicas have been identified as X. campestris pv. raphani..
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Lysobacterales
Lysobacteraceae
Xanthomonas
campestris
pv. raphani
Under_Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (5 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Burkina Faso | Present | — |
| India | Quarantine pests | — |
| Nepal | Quarantine pests | — |
| Panama | Quarantine pests | — |
| Sudan | Quarantine pests | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000590355.1 | Chromosome | 4 | 1210 | 4911 | - |
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20120327 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR27960985 | - | - | - | 20602358 | - | |
|
SRX23617531 SRP489441 Xcr-CFBP5828_RbmL_pBBR_RNA_seq1 CFBP5828 {'title': 'Xcr-CFBP5828_RbmL_pBBR_RNA_seq', 'strain': 'CFBP5828', 'genotype': 'pBBR, Rifampicin-resistant derivative from CFBP5828', 'molecule': 'total_RNA', 'growth_protocol': 'Moka medium Exponential phase', 'extract_protocol': 'mirvana, Ambion Ribodepletion Sizing more than 200pb Ribominus'} |
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| SRR27960986 | - | - | - | 17048621 | - | |
|
SRX23617532 SRP489441 Xcr-CFBP5828_RbmL_pBBR_RNA_seq2 CFBP5828 {'title': 'Xcr-CFBP5828_RbmL_pBBR_RNA_seq', 'strain': 'CFBP5828', 'genotype': 'pBBR, Rifampicin-resistant derivative from CFBP5828', 'molecule': 'total_RNA', 'growth_protocol': 'Moka medium Exponential phase', 'extract_protocol': 'mirvana, Ambion Ribodepletion Sizing more than 200pb Ribominus'} |
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| SRR27960987 | - | - | - | 13707941 | - | |
|
SRX23617533 SRP489441 Xcr-CFBP5828_RbmL_pBBR_RNA_seq3 CFBP5828 {'title': 'Xcr-CFBP5828_RbmL_pBBR_RNA_seq', 'strain': 'CFBP5828', 'genotype': 'pBBR, Rifampicin-resistant derivative from CFBP5828', 'molecule': 'total_RNA', 'growth_protocol': 'Moka medium Exponential phase', 'extract_protocol': 'mirvana, Ambion Ribodepletion Sizing more than 200pb Ribominus'} |
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Literature
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