Clavibacter michiganensis subsp. michiganensis
TaxID: 33013
Basic Information
Clavibacter michiganensis subsp. michiganensis
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Clavibacter michiganensis is an aerobic non-sporulating Gram-positive plant pathogenic actinomycete of the genus Clavibacter. Clavibacter michiganensis has several subspecies. Clavibacter michiganensis subsp. michiganensis causes substantial economic losses worldwide by damaging tomatoes and potatoes.
from Wikipedia
Taxonomic Information
Bacteria
Actinomycetota
Actinomycetes
Micrococcales
Microbacteriaceae
Clavibacter
Clavibacter michiganensis
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Under_Species
k__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;g__Clavibacter;s__Clavibacter michiganensis
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (29 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Burkina Faso | Absent | — |
| Cambodia | Quarantine pests | — |
| China | Quarantine pests | — |
| Cuba | Absent | — |
| Egypt | Present | — |
| EPPO A2 | Present | — |
| Georgia | Absent | — |
| Ghana | Quarantine pests | — |
| Guinea | Quarantine pests | — |
| Guatemala | Absent | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_002150935.1 | Contig | 3 | 3284 | 3284 | - |
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ASM215093v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR17126344 | - | - | - | 9437059 | not applicable | |
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PRJNA785121 SRX13310831 SRP349205 prokaryote RNA-seq of Clavibacter C3_2_2d BT0505 {'strain': 'BT0505', 'num_replicons': '1', 'biosamplemodel': 'MIGS.ba', 'collection_date': '2020-12-08'} |
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| SRR17126343 | - | - | - | 13975585 | not applicable | |
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PRJNA785121 SRX13310832 SRP349205 prokaryote RNA-seq of Clavibacter C4_1_10d BT0505 {'strain': 'BT0505', 'num_replicons': '1', 'biosamplemodel': 'MIGS.ba', 'collection_date': '2020-12-09'} |
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| SRR17126342 | - | - | - | 17027825 | not applicable | |
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PRJNA785121 SRX13310833 SRP349205 prokaryote RNA-seq of Clavibacter C4_2_10d BT0505 {'strain': 'BT0505', 'num_replicons': '1', 'biosamplemodel': 'MIGS.ba', 'collection_date': '2020-12-10'} |
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Literature
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