Potato spindle tuber viroid
TaxID: 12892
Basic Information
Potato spindle tuber viroid
Potato Spindle Tuber Viroid
The potato spindle tuber viroid (PSTVd, Pospiviroid fusituberis) was the first viroid to be identified. PSTVd is a small, single stranded circular RNA molecule closely related to the chrysanthemum stunt viroid. Present within the viroidal RNA is the Pospiviroid RY motif stem loop common to its genus. The natural hosts are potatoes (Solanum tuberosum) and tomatoes (Solanum lycopersicum). All potatoes and tomatoes are susceptible to PSTVd and there is no form of natural resistance. Natural infections have also been seen in avocados and infections in other solanaceous crops have been induced in the laboratory. Until 2017 PSTVd was thought to be unable to infect Solanum sisymbriifolium. Then in May seeds exported by a Dutch company were noticed to be infected. These seeds were shipped from the company, but had been originally bred to their specifications in two Asian countries. PSTVd also causes tomato bunchy top and is seed transmitted in tomato. It contains single stranded RNA without protein coat.
from Wikipedia
Taxonomic Information
unclassified
unclassified
unclassified
unclassified
Pospiviroidae
Pospiviroid
Pospiviroid fusituberis
nan
No Rank
nan
k__unclassified;p__unclassified;c__unclassified;o__unclassified;f__Pospiviroidae;g__Pospiviroid;s__Pospiviroid fusituberis
nan
Viruses/Viroids
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (54 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Anisodus luridus | Host |
| Anisodus tanguticus | Host |
| Atriplex semilunaris | Host |
| Atropa belladonna | Host |
| Atropanthe sinensis | Host |
| Browallia americana | Host |
| Brugmansia sanguinea | Host |
| Calibrachoa sp. | Host |
| Campanula medium | Host |
| Capsicum annuum | Host |
Quarantine Status (45 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Albania | Quarantine pests | — |
| Argentina | Absent | — |
| Armenia | Absent | — |
| Burkina Faso | Present | — |
| Bulgaria | Quarantine pests | — |
| Belarus | Present | — |
| Canada | Quarantine pests | — |
| China | Quarantine pests | — |
| Cuba | Absent | — |
| Cyprus | Quarantine pests | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000856265.1 | Complete Genome | - | - | - | - |
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ViralProj14966 |
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Transcriptomes (2 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR11428498,SRR11428499,SRR11428500,SRR11428501 | - | - | - | 297430 | N/A | |
|
PRJNA615634 SRX8006842 SRP254140 general GSM4434545: Tomato_PSTVd_L1; Solanum lycopersicum; RNA-Seq {'variant': 'RG1', 'source_name': 'Solanum lycopersicum cv. Rutgers leaf tissue'} |
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| SRR11428502,SRR11428503,SRR11428504,SRR11428505 | - | - | - | 504032 | N/A | |
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PRJNA615634 SRX8006843 SRP254140 general GSM4434546: Tomato_PSTVd_L2; Solanum lycopersicum; RNA-Seq {'variant': 'RG1', 'source_name': 'Solanum lycopersicum cv. Rutgers leaf tissue'} |
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Literature
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