Corynespora cassiicola
TaxID: 59586
Basic Information
Corynespora cassiicola
Leaf Spot of Cotton, gurkbrand
Corynespora cassiicola is a species of fungus well known as a plant pathogen. It is a sac fungus in the family Corynesporascaceae. It is the type species of the genus Corynespora.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Dothideomycetes
Pleosporales
Corynesporascaceae
Corynespora
cassiicola
nan
Species
nan
k__Eukaryota;p__Ascomycota;c__Dothideomycetes;o__Pleosporales;f__Corynesporascaceae;g__Corynespora;s__Corynespora cassiicola
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (3 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (46 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | — |
| Benin | Present | — |
| Brazil | Present | — |
| Canada | Present | — |
| China | Present | — |
| Côte d'Ivoire | Present | — |
| Cameroon | Present | — |
| Cook Islands | Present | — |
| Colombia | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_002975495.1 | Contig | 43 | 49 | 49 | - |
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ASM297549v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR35334755 | - | - | - | 18970359 | China: Pingba County, Guizhou Province | |
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PRJNA1325450 SRX30435299 SRP618980 fungi Corynespora cassiicola treated with pyrimethanil for 36 hours, with a final concentration of EC70 The mycelium plug (diameter 4 mm) at the edge of Corynespora cassiicola colony 7d was transferred into PDB medium with final pyrimethanil concentrations of EC70, and inoculated in an incubator at 25 for 36 h. The RNA of the total sample was isolated and purified by TRIzol (thermofisher, 15596018) according to the operation scheme provided by the manufacturer. Then the quantity and purity of total RNA was controlled by NanoDrop ND-1000 (NanoDrop, Wilmington, DE, USA) and the integrity of RNA was detected by Bioanalyzer 2100 (Agilent, CA, USA). The concentration was >50ng/L, RIN value >7.0, and total RNA>4g. Corynespora cassiicola sample 7 {'strain': 'GZUGPL2024', 'isolate': 'Corynespora cassiicola sample 7', 'lat_lon': '26.45 N 106.28 E', 'collected_by': 'Zhuo Chen', 'geo_loc_name': 'China: Pingba County, Guizhou Province', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2024-06', 'isolation_source': 'Cucumber target leaf'} |
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| SRR35334754 | - | - | - | 18717126 | China: Pingba County, Guizhou Province | |
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PRJNA1325450 SRX30435300 SRP618980 fungi Corynespora cassiicola treated with pyrimethanil for 36 hours, with a final concentration of EC70 The mycelium plug (diameter 4 mm) at the edge of Corynespora cassiicola colony 7d was transferred into PDB medium with final pyrimethanil concentrations of EC70, and inoculated in an incubator at 25 for 36 h. The RNA of the total sample was isolated and purified by TRIzol (thermofisher, 15596018) according to the operation scheme provided by the manufacturer. Then the quantity and purity of total RNA was controlled by NanoDrop ND-1000 (NanoDrop, Wilmington, DE, USA) and the integrity of RNA was detected by Bioanalyzer 2100 (Agilent, CA, USA). The concentration was >50ng/L, RIN value >7.0, and total RNA>4g. Corynespora cassiicola sample 8 {'strain': 'GZUGPL2024', 'isolate': 'Corynespora cassiicola sample 8', 'lat_lon': '26.45 N 106.28 E', 'collected_by': 'Zhuo Chen', 'geo_loc_name': 'China: Pingba County, Guizhou Province', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2024-06', 'isolation_source': 'Cucumber target leaf'} |
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| SRR35334753 | - | - | - | 17226769 | China: Pingba County, Guizhou Province | |
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PRJNA1325450 SRX30435301 SRP618980 fungi Corynespora cassiicola treated with pyrimethanil for 36 hours, with a final concentration of EC70 The mycelium plug (diameter 4 mm) at the edge of Corynespora cassiicola colony 7d was transferred into PDB medium with final pyrimethanil concentrations of EC70, and inoculated in an incubator at 25 for 36 h. The RNA of the total sample was isolated and purified by TRIzol (thermofisher, 15596018) according to the operation scheme provided by the manufacturer. Then the quantity and purity of total RNA was controlled by NanoDrop ND-1000 (NanoDrop, Wilmington, DE, USA) and the integrity of RNA was detected by Bioanalyzer 2100 (Agilent, CA, USA). The concentration was >50ng/L, RIN value >7.0, and total RNA>4g. Corynespora cassiicola sample 9 {'strain': 'GZUGPL2024', 'isolate': 'Corynespora cassiicola sample 9', 'lat_lon': '26.45 N 106.28 E', 'collected_by': 'Zhuo Chen', 'geo_loc_name': 'China: Pingba County, Guizhou Province', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2024-06', 'isolation_source': 'Cucumber target leaf'} |
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DNA Barcodes (121 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBPLE996-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 | |
| GBPLE995-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 | |
| GBPLE994-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 | |
| GBPLE993-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 | |
| GBPLE992-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 | |
| GBPLE991-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 | |
| GBPLE990-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 | |
| GBPLE989-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 | |
| GBPLE988-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 | |
| GBPLE987-13 | - | ITS | 559 | Malaysia | - | 3.671661, 114.6333 |
Literature
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