Pseudomonas syringae pv. tomato
TaxID: 323
Basic Information
Pseudomonas syringae pv. tomato
Causal Agent of Bacterial Canker of Kiwifruit
Pseudomonas syringae is a rod-shaped, Gram-negative bacterium with polar flagella. As a plant pathogen, it can infect a wide range of species, and exists as over 50 different pathovars, all of which are available to researchers from international culture collections such as the NCPPB, ICMP, and others. Pseudomonas syringae is a member of the genus Pseudomonas, and based on 16S rRNA analysis, it has been placed in the P. syringae group. It is named after the lilac tree (Syringa vulgaris), from which it was first isolated. A phylogenomic analysis of 494 complete genomes from the entire Pseudomonas genus showed that P. syringae does not form a monophyletic species in the strict sense, but a wider evolutionary group that also included other species as well, such as P. avellanae, P. savastanoi, P. amygdali, and P. cerasi. Pseudomonas syringae tests negative for arginine dihydrolase and oxidase activity, and forms the polymer levan on sucrose nutrient agar. Many, but not all, strains secrete the lipopeptide plant toxin syringomycin, and it owes its yellow fluorescent appearance when cultured in vitro on King's B medium to production of the siderophore pyoverdin. Pseudomonas syringae also produces ice nucleation active (INA) proteins which cause water (in plants) to freeze at fairly high temperatures (?1.8 to ?3.8 C (28.8 to 25.2 F)), resulting in injury. Since the 1970s, P. syringae has been implicated as an atmospheric biological ice nucleator, with airborne bacteria serving as cloud condensation nuclei. Recent evidence has suggested the species plays a larger role than previously thought in producing rain and snow. They have also been found in the cores of hailstones, aiding in bioprecipitation. These INA proteins are also used in making artificial snow. Pseudomonas syringae pathogenesis is dependent on effector proteins secreted into the plant cell by the bacterial type III secretion system. Nearly 60 different type III effector families encoded by hop genes have been identified in P. syringae. Type III effectors contribute to pathogenesis chiefly through their role in suppressing plant defense. Owing to early availability of the genome sequence for three P. syringae strains and the ability of selected strains to cause disease on well-characterized host plants, including Arabidopsis thaliana, Nicotiana benthamiana, and the tomato, P. syringae has come to represent an important model system for experimental characterization of the molecular dynamics of plant-pathogen interactions.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
syringae group genomosp.3
pv. tomato
Under_Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas syringae group genomosp. 3
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (13 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| China | Quarantine pests | 2021 |
| Cuba | Absent | — |
| Egypt | Abesent | 2018 |
| India | Quarantine pests | — |
| Jordan | A2 list | 2013 |
| Madagascar | Quarantine pests | — |
| Mexico | Quarantine pests | 2018 |
| Nicaragua | Absent | — |
| Panama | Quarantine pests | — |
| French Polynesia | Quarantine pests | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_002966555.1 | Complete Genome | 6 | 6220 | 6220 | - |
|
|
|
ASM296655v1 |
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| GCF_000765305.1 | Scaffold | 6 | 172 | 195 | - |
|
|
|
ASM76530v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR35496111 | - | - | - | 9869370 | - | |
|
PRJNA1330721 SRX30572557 SRP621880 GSM9246437: Control, 30 minutes, biological replicate 1; Pseudomonas syringae pv. tomato; RNA-Seq DAPP-215 {'time': '30 minutes', 'strain': 'DAPP-215', 'genotype': 'WT', 'pathovar': 'tomato', 'cell type': 'bacterial', 'treatment': 'ultra-pure sterile water', 'source_name': 'bacterial culture', 'sample group': 'Control'} |
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| SRR35496110 | - | - | - | 9493705 | - | |
|
PRJNA1330721 SRX30572558 SRP621880 GSM9246438: Control, 30 minutes, biological replicate 2; Pseudomonas syringae pv. tomato; RNA-Seq DAPP-215 {'time': '30 minutes', 'strain': 'DAPP-215', 'genotype': 'WT', 'pathovar': 'tomato', 'cell type': 'bacterial', 'treatment': 'ultra-pure sterile water', 'source_name': 'bacterial culture', 'sample group': 'Control'} |
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| SRR35496109 | - | - | - | 9317870 | - | |
|
PRJNA1330721 SRX30572559 SRP621880 GSM9246439: Control, 30 minutes, biological replicate 3; Pseudomonas syringae pv. tomato; RNA-Seq DAPP-215 {'time': '30 minutes', 'strain': 'DAPP-215', 'genotype': 'WT', 'pathovar': 'tomato', 'cell type': 'bacterial', 'treatment': 'ultra-pure sterile water', 'source_name': 'bacterial culture', 'sample group': 'Control'} |
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Literature
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