Avena sterilis
TaxID: 83444
Basic Information
Avena sterilis
Animated Oat
Avena sterilis (animated oat, sterile oat, wild oat, wild red oat, winter wild oat; syn. Avena ludoviciana Durieu; Avena macrocarpa Moench; Avena sterilis ssp. sterilis; Avena sterilis ssp. ludoviciana) is a species of grass weed whose seeds are edible. Many common names of this plant refer to the movement of its panicle in the wind.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Poales
Poaceae
Avena
sterilis
Unclassified
Species
nan
d__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Poales;f__Poaceae;g__Avena;s__Avena sterilis
nan
Weeds
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (5 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| China | Quarantine pests | 2021 |
| Egypt | Disinfected-Admitted | — |
| Mexico | Quarantine pests | 2018 |
| Nicaragua | Absent | — |
| United States of America | Quarantine pests | 1989 |
Distribution (75 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Afghanistan | Present | — |
| Albania | Present | — |
| Algeria | Present | — |
| Andorra | Present | — |
| Argentina | Present | — |
| Armenia | Present | — |
| Australia | Present | — |
| Austria | Present | — |
| Azerbaijan | Present | — |
| Belgium | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_947313225.1 | Chromosome | 10884 | 165082 | 515821 | - |
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Asterilis_TN1_v1.0 |
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Transcriptomes (5 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| ERR10496140 | - | - | - | 41713776 | - | |
|
PRJEB57570 ERX10013459 ERP142558 weed Illumina NovaSeq 6000 paired end sequencing {'genus': 'Avena', 'species': 'sterilis', 'checklist': 'BSDC00001', 'sample id': 'IPK_LIMS:3010472', 'sample name': 'AGK016', 'library type': 'RNASeq', 'project name': 'PanOat Transcriptome', 'accession name': 'TN1', 'collection date': 'not collected', 'growth facility': 'greenhouse', 'biological material id': 'AGK016', 'plant anatomical entity': 'leaf', 'biological material ploidy': 'hexaploid', 'biological material latitude': '52.43291', 'biological material longitude': '-4.017400', 'plant structure development stage': 'flowering stage', 'material source geographic location': 'not collected', 'biological material geographic location': 'United Kingdom', 'geographic location (country and/or sea)': 'not collected'} |
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| ERR10496139 | - | - | - | 34203305 | - | |
|
PRJEB57570 ERX10013458 ERP142558 weed Illumina NovaSeq 6000 paired end sequencing {'genus': 'Avena', 'species': 'sterilis', 'checklist': 'BSDC00001', 'sample id': 'IPK_LIMS:3010471', 'sample name': 'AGK015', 'library type': 'RNASeq', 'project name': 'PanOat Transcriptome', 'accession name': 'TN5', 'collection date': 'not collected', 'growth facility': 'greenhouse', 'biological material id': 'AGK015', 'plant anatomical entity': 'leaf', 'biological material ploidy': 'hexaploid', 'biological material latitude': '52.43291', 'biological material longitude': '-4.017400', 'plant structure development stage': 'flowering stage', 'material source geographic location': 'not collected', 'biological material geographic location': 'United Kingdom', 'geographic location (country and/or sea)': 'not collected'} |
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| ERR10496136 | - | - | - | 37552678 | - | |
|
PRJEB57570 ERX10013455 ERP142558 general Illumina NovaSeq 6000 paired end sequencing {'genus': 'Avena', 'species': 'sterilis', 'checklist': 'BSDC00001', 'sample id': 'IPK_LIMS:3010468', 'sample name': 'AGK012', 'library type': 'RNASeq', 'project name': 'PanOat Transcriptome', 'accession name': 'TN1', 'collection date': 'not collected', 'growth facility': 'greenhouse', 'biological material id': 'AGK012', 'plant anatomical entity': 'palea', 'biological material ploidy': 'hexaploid', 'biological material latitude': '52.43291', 'biological material longitude': '-4.017400', 'plant structure development stage': 'flowering stage', 'material source geographic location': 'not collected', 'biological material geographic location': 'United Kingdom', 'geographic location (country and/or sea)': 'not collected'} |
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| ERR10496141 | - | - | - | 51859956 | - | |
|
PRJEB57570 ERX10013460 ERP142558 weed Illumina NovaSeq 6000 paired end sequencing {'genus': 'Avena', 'species': 'sterilis', 'checklist': 'BSDC00001', 'sample id': 'IPK_LIMS:3010473', 'sample name': 'AGK017', 'library type': 'RNASeq', 'project name': 'PanOat Transcriptome', 'accession name': 'TN4', 'collection date': 'not collected', 'growth facility': 'greenhouse', 'biological material id': 'AGK017', 'plant anatomical entity': 'leaf', 'biological material ploidy': 'hexaploid', 'biological material latitude': '52.43291', 'biological material longitude': '-4.017400', 'plant structure development stage': 'flowering stage', 'material source geographic location': 'not collected', 'biological material geographic location': 'United Kingdom', 'geographic location (country and/or sea)': 'not collected'} |
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| ERR10496142 | - | - | - | 46640302 | - | |
|
PRJEB57570 ERX10013461 ERP142558 general Illumina NovaSeq 6000 paired end sequencing {'genus': 'Avena', 'species': 'sterilis', 'checklist': 'BSDC00001', 'sample id': 'IPK_LIMS:3010474', 'sample name': 'AGK018', 'library type': 'RNASeq', 'project name': 'PanOat Transcriptome', 'accession name': 'TN4', 'collection date': 'not collected', 'growth facility': 'greenhouse', 'biological material id': 'AGK018', 'plant anatomical entity': 'top node', 'biological material ploidy': 'hexaploid', 'biological material latitude': '52.43291', 'biological material longitude': '-4.017400', 'plant structure development stage': 'vegetative stage', 'material source geographic location': 'not collected', 'biological material geographic location': 'United Kingdom', 'geographic location (country and/or sea)': 'not collected'} |
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DNA Barcodes (24 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| SDH2347-14 | - | rbcLa | 545 | United States | 2005-04-12 | 32.965, -117.257 | |
| SAFH4995-12 | - | rbcLa | 552 | South Africa | 2011-09-14 | -33.55289, 18.82469 | |
| PCUBC839-14 | - | rbcLa | 552 | Canada | 1904-09-16 | - | |
| KNPB752-10 | - | rbcLa | 552 | South Africa | 1970-11-03 | -25.63333, 27.88333 | |
| IBPLT101-24 | - | trnL-F | 379 | Portugal | 2019-05-02 | 41.57111, -6.766946 | |
| GBVW1878-13 | - | matK | 978 | Spain | - | 40.36501, -3.6516252 | |
| GBVS741-13 | - | rbcL | 576 | - | - | - | |
| GBVS1125-13 | - | matK | 748 | Italy | - | 42.98201, 12.763658 | |
| GBVD2997-11 | - | matK | 1502 | - | - | - | |
| GBVD2996-11 | - | matK | 1502 | - | - | - |
Literature
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