Pratylenchus neglectus

TaxID: 222096

Basic Information

Scientific Name *

Common Name

Bietenwortellesieaaltje, California Meadow Nematode

Introduction

Pratylenchus neglectus is a plant-pathogenic nematode infecting potato, alfalfa and mint.

from Wikipedia

Taxonomic Information

Domain/Kingdom

Eukaryota

Phylum

Nematoda

Class

Chromadorea

Order

Rhabditida

Family

Pratylenchidae

Genus

Pratylenchus

Species

neglectus

Subspecies

-

Photos (2 photos)

c

Morphological Features

No morphological description available.

Host Plants (0 host plants)

Data sources: EPPO Global Database and relevant literature.

No host plants available.

Quarantine Status (5 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country	Status	Year Added
Jordan	A2 list	2013
Peru	Absent	—
Paraguay	Quarantine pests	—
Singapore	Quarantine pests	—
Uruguay	Absent	—

Distribution (10 countries)

Data Sources: EPPO Global Database and GBIF.

10

Present

0

Absent

0

Unknown/Other

Country	Status	State
Argentina	Present	—
Australia	Present	—
Bulgaria	Present	—
Bolivia (Plurinational State of)	Present	—
China	Present	—
Germany	Present	—
France	Present	—
Republic of Korea	Present	—
United States of America	Present	—
South Africa	Present	—

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Download CSV

Genomes (1 records)

Data source: NCBI.

Assembly Accession	Assembly Level	Genome Size(Mb)	Contig N50(Kb)	Scaffold N50(Kb)	BUSCO%	Downloads	Actions
GCA_051311415.1	Scaffold	111	214	242	-	FASTA
Assembly Name AAFC_Pneg_CAN_AB_01

Transcriptomes (3 records)

Data source: NCBI.

Run ID	Tissue	Developmental Stage	Sex	Read Count	Location	Actions
SRR28611461	J3	-	-	21421882	Canada: Alberta	Download NCBI
BioProject PRJNA1098646 Experiment ID SRX24209815 Study ID SRP500741 Category general Title Comparative genomics analysis of root-lesion nematode P. neglectus Design Description RNA extracted from larvae Strain 4 Sample Attributes {'host': 'tomato', 'breed': 'Pneg_CAN_AB', 'tissue': 'J3', 'isolate': '4', 'geo_loc_name': 'Canada: Alberta', 'biosamplemodel': 'Invertebrate'}
SRR28611460	J4	-	-	16645638	Canada: Alberta	Download NCBI
BioProject PRJNA1098646 Experiment ID SRX24209816 Study ID SRP500741 Category general Title Comparative genomics analysis of root-lesion nematode P. neglectus Design Description RNA extracted from larvae Strain 5 Sample Attributes {'host': 'tomato', 'breed': 'Pneg_CAN_AB', 'tissue': 'J4', 'isolate': '5', 'geo_loc_name': 'Canada: Alberta', 'biosamplemodel': 'Invertebrate'}
SRR28611459	Adults	-	-	45842144	Canada: Alberta	Download NCBI
BioProject PRJNA1098646 Experiment ID SRX24209817 Study ID SRP500741 Category general Title Comparative genomics analysis of root-lesion nematode P. neglectus Design Description RNA extracted from larvae Strain 8 Sample Attributes {'host': 'tomato', 'breed': 'Pneg_CAN_AB', 'tissue': 'Adults', 'isolate': '8', 'geo_loc_name': 'Canada: Alberta', 'biosamplemodel': 'Invertebrate'}

DNA Barcodes (587 records)

View all

Data source: BOLD.

Process ID	BIN	Marker	Length	Country	Date	Lat/Lon	Sequence
GBNEM7695-23	-	18S-5P	715	Czechia	-	-	CATGCTTGTCTCAAAGATTAAGCCATGCATGTATAAGTATA-A-----CCTGCCAGACAGGGAAACTGCGTACGGCTCATTACA-CCAGCCTTAATTTACTTGACCTTGACAA-C------CTAC-TTGGATAA-CTGTGGTA-ATTCTAGAG-CTAATACATGCACCAAAGCTCCGATCCCTTGCTGGAGAG-------------------------------G-AG-CGCATTTGTTCGCCACAAAACCAAG----------------------------------------------------------CG--CC-CTCACGGGCGTTCAGTGTTGACTCAGAATAAC--TA-AGCTGAT--CGCACGGTC-TTGCACCGGCGACGTGT-CTTTCAAGT-GTCTGCCTTATCAACTTTCGATGGTAGTGT-ACCTGACTACCATGG-TGATGACGGGTAACGGAGGATA-AGGGTTCGACTCCG-GAG-----AAGG--GG-CCTGAGAA----ATGGCCACTACG-TCTAAGGATGGC-----AGCA-GGCGCGCAAATTACCCACTCTCAATTCGAG-------GAGGTAGTGACGAGAAATAACGAGACCGTTCTC--ACAA-GAGGCC----GGTCATCGGAATGGGTACAA--------------TCTAAACCCTTTAAC--GAGTATCTATGAGAGGGC-AAGTCTGGTGC------CAGCA-GCCGCGGTAATTCCAG----CTCTCAAAATGCATAGAA--TTATTGCTGCG---GTTAAAA-AGCTCGTAGTTGGATCTGTGCTGGCCGTCCGGTCTACCCACTGGGT-ACGTACTGGTATGGTCGGCTTTC-TG--TC---------------------------------C----G-GT--TTCTCCCGGCGT------TG-------------G--------CC---TTCAC-CGGTCGGCGACGG
GBNEM7694-23	-	18S-5P	706	Czechia	-	-	-TGCTTGTTCTCAAAGATTAAGCCATGCATGTGTAAGT-TTAA-----CCTGCCAGACAGGGAAACTGCGTACGGCTCATTACA-CCAGCTATAATTTACTTGACCTTGACTT-C------TTAC-TTGGATAA-CTGTGGTA-ATTCTAGAG-CTAATACATGCACCAAAGCTCCAATCTCCCCAG--AGCG-------------------------------G-AG-CGCATTTGTTCGCCACAAAACCAAG----------------------------------------------------------CG----CCCTCCGGGCGTCCAGTGTTGACTCAGAACAAC--TA-AGCTGAT--CGCACGGTC-TTGTACCGGCGACGTGT-CTTTCAAGT-GTCTGCCTTATCAACTTTCGATGGTAGTGT-ATCTGACTACCATGG-TGATGACGGGTAACGGAGGATA-AGGGTTCGACTCCG-GAG-----AAGG--GG-CCTGAGAA----ATGGCCACTACG-TCTAAGGATGGC-----AGCA-GGCGCGCAAATTACCCACTCTCAACGCGAG-------GAGGTAGTGACGAGAAATAACGAGACCGATCTC--TTAT-GAGGCC----GGTCATCGGAATGGGTACAA--------------TTTAAACCCTTTAAC--GAGTATCTATGAGAGGGC-AAGTCTGGTGC------CAGCA-GCCGCGGTAATTCCAG----CTCTCAAAATGCATAGAA--TTATTGCTGCG---GTTAAAA-AGCTCGTAGTTGGATCTGTGCTAGCCGTCCGGTGCACACTTTGTGTGT-TACTGGTTCGGTTGG------CTT--TT---------------------------------C----T-GCCGGTCTCTCCCCGG------CG-------------T--------TGGCCTTTAC-CGGTCGGC
GBNEM7693-23	-	18S-5P	714	Czechia	-	-	-ATGCTTGTCTCAAAGATTAAGCCATGCATGTATAAGTATA-A-----CCTGCCAGACAGGGAAACTGCGTACGGCTCATTACA-CCAGCTGTAATTTACTTGACCTTGACAACC------TA-CTTGGATAAC-TGTGGTAA--TTCTAGAG-CTAATACATGCACCAAAGCTCCGATCC-TCGCGGAGAGG-------------------------------A-GC-GCATTTGTTCGCCACAAAACCAAGC----------------------------------------------------------GC--CTT--CACAGGCGTTCAGTGTTGACTCAGAACAAC--TC-AGCTGAT--CGCACGGTC-TTGCACCGGCGACGTGT-CTTTCAAGT-GTCTGCCTTATCAACTTTCGATGGTAGTGT-ACCTGACTACCATGG-TGATGACGGGTAACGGAGGATA-AGGGTTCGACTCCG-GAG-----AAGG--GG-CCTGAGAA----ATGGCCACTACG-TCTAAGGATGGC-----AGCA-GGCGCGCAAATTACCCACTCTCAACATGAG-------GAGGTAGTGACGAGAAATAACGAGACTGTTCTC--ACAT-GAGGCC----AGTTATTGGAATGGGTACAA--------------TTTAAACCCTTTAAC--GAGTATCTATGAGAGGGC-AAGTCTGGTGC------CAGCA-GCCGCGGTAATTCCAG----CTCTCAAAATGCATAGAA--TTATTGCTGCG---GTTAAAA-AGCTCGTAGTTGGATCTGTGTTGGCCGCCCGGTCTGCCCCTCGTGGTATGCACTGGTGCGGTCGGCTTTTCTG--TC---------------------------------G----G-AA-----TGCCTCACA------GC-------------G--------TTGGCCTTCATCGGCTGGCGCTG
GBNEM7692-23	-	18S-5P	704	Czechia	-	-	--TGCTTGTCTCAAAGATTAAGCCATGCATGTATAAGTATAAA-----CGAC-ATGATCGTGAAACCGCGAACGGCTCATTATA-ACAGCTATAATTT---ACTTGATCTTGACA-----ATTTACTTGGATAA-CTGTGGTA-ATTCTAGAG-CTAATACATGCACC-AAAGCTCCGACCGTAAGGGAAGAG-------------------------------CGCATTTA--TT---AGAAGAAAACCAAGC----------------------------------------------------------GGC--TTCG----GCCGTTCAATGTTGACTCAGAATAAC--TA-AGCTGAT--CGCATGGTCTTG-TACCGGCGACGTGT-CTTTCAAGT-ATCTGCCTTATCAACTTTCGATGGTAGTTT-ATCTGACTACCATGG-TGGTGACGGGTAACGGAGGATA-AGGGTTCGACTCCG-GAG-----AAGG--GG-CCTGAGAA----ATGGCCACTACG-TCTAAGGATGGC-----AGCA-GGCGCGCAAATTACCCACTCTCAGAA-----TGA--GGAGGTAGTGACGAGAAATAACAAGACCGTTCTC--TCAA-GAGGCC----GGTCATTGGAATGGGTACAA--------------TTTAAAC-CCTTTAAC-GAGTATCTATGAGAGGGC-AAGTCTGGTGC------CAGCA-GCCGCGGTAATTCCAG---CTC-TCAAAATGCATAGAA--TTATTGCTGCG---GTTAAAA-AGCTCGTAGTTGGATCTGTGCTGGCGTGCCGGTCTATCTTCGGATTTGTACTGGTTTCGCTGGCTTT-CC-----TG---------------------------------T------TGTATTTGGCCCTG--------------------------------TGTCCTTTACTGGATGCAGGTGTC
GBNEM7691-23	-	18S-5P	698	Czechia	-	-	---------CTCAGAGATTAAGCCATGCATGTATAAGTATAAC-----CGAT-TTATTNGTGAAACCGCGAACGGCTCATTATA-ACAGCTATAATTT---ACTTGAATTTGACA----ACCCTACTTGGATAC-CGGTGGTA-ATTCTAGCG-CTAATACATGCACC-AAAGCTCCGACCGCGAGGGAAGAG-------------------------------CGCATTTAT-TA---GAACAAAACC-ACAC----------------------------------------------------------GGC--TTCG----GCCGTCCAATGTTGACTCAGAATAAC--TA-AGCTGAT--CGCATGGTCTTG-CACCGGCGACGTTT-CTTTCAAGT-ATCTGCCTTATCAACTTTCGATGGTAGTGT-ATCTGACTACCATGG-TGATGACGGGTAACGGAGGATA-AGGGTTCGACTCCG-GAG-----AAGG--GG-CCTGAGAA----ATGGCCACTACG-TCTAAGGATGGC-----AGCA-GGCGCGCAAATTACCCACTCTCAGTA-----CGA--GGAGGTAGTGACGAGAAATAACAAGACCGTTCTC--ACAA-GAGGCC----GGTCATTGGAATGGGTACAA--------------TTTAAAC-CCTTTAAC-GAGTATCTATGAGAGGGC-AAGTCTGGTGC------CAGCA-GCCGCGGTAATTCCAG---CTC-TCAAAATGCATAGAA--TTATTGCTGCG---GTTAAAA-AGCTCGTAGTTGGATCTGTGCTGGCCTCCCGGTCCACCTCCGGGTGCGCACTGGGCAGGTTGGCTTTTCT-----GT---------------------------------C------GTTGACGCG--------------------------------------GATGTTCCTAACG-GGGCAACCGCATCGCG
GBNEM7690-23	-	18S-5P	667	Unrecoverable	-	-	---------------------------------------------------------------------------CGAACGG---------------C-TCATTAC-AACA-GCTAT--AA----TTTACTTGATCTTG----------------AC---A-TCCTACTTGGATAACTGTGGTAA-TTCTAGAGCTAA-TACATGCACCAAAGCTCCAACCCGCAAGG-----------------------------------GAAGAGC-GCATTTATTAGAAC-AA---AAC----------------------------------------------------CATAGGGCTTCG-GCCCTCAAACGCTGACTCAG--AATAACTA---AGCTGATCGCA--TGGTCTTGTACCGGCGACGTGTCTTTC-AAGTATCTGCCT--TAT-CAACTTTCGATGGT---------ACTGTCA-TTGACTACCATGGTGGTG--ACGGGTAACGGAGGATCAGGGTTCG-ACTCCG-GAGAAGG--------GGCCTGAGA-AATGGCCACTACGTCTAAGGATGGC-AGCAGGC------------------GCGCAAATTACCCACT-CTCAGTACAAAA--------CGAGG---AGGTAGTGA----C---GAGAAATAACGAGACCGTTC------TCAACAGAG-GCCGGTCATC-GGAATGGG-TA-CAATTTAAACC--CTTTAACGAGTATCTAC-------GAGA--GGGCAAGTCTGGTGCCAGCAGCCGCGGTA-ATTCCAGCTCTCGAAA-TGCATAGAATTATTGCT-GCGGTTAAAAAG--CTCGTAGTTGGATCTGTGCTAACACGCTGGTCCATCTTCGGATGCGTACTA--GTTGTGTTGGC--------TTTTCTGCA-GT--TTGTC-GGCCT---------G---TGC--------------------------------------------------CCTTAA-CGGGGTGCAGTGT---CCGGTGCTGCAA-GTTTACT
GBNEM7689-23	-	18S-5P	532	Unrecoverable	-	-	-----------------------------------------------------TG-GTAAAGCCGCGAATGGCTCATTACAA---CAGCCACAGTTTATTGGGTCTC-C-----ATTTACTTG----GA---TAACTGAGCTAA---TTGTTGAG-CTAATACA-CGCACCAAAGCTTCGACCTC-------------------------------ACGG-----GAGGAGCGCATTTATTAGAACA-AAACCAAT-CGGACT---------------------T------------------------C----GGTCCGTCC---ATTGGTGAATC--TAAATAACTTA-GCCGATCG-CATGGTCT-CGCACC---GGCGACTCACCTTTC-AAATGTCTGCCTTATC--ACCTTTCGATGGTAGTTTA--TACGCC-TAC-CAT-GG----GTTT-TACGGGTAACGGAGAATAAGGGTTCGACTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCACGCAAATT-AC-CCACTCCCGGCACGGGG--AGGTAGTGA------CGAAAAATAACGAGGCG--GTT-CTCTA-TGAGGC-CCGCCATCGGAATG---G-GT-ACAATC-T-AAATCCTT----------TA-ACG--AG--GAACTATTGGAGGG-CA--A------GT--CT-------GGT-G--CC-AGCA---GCCGCGGTAATTCCA--------GCT--CCAATAGC-GTATATTAAA-GTTGT------------------------------------------------------------------------------------------------------------------------
GBNEM7688-23	-	18S-5P	930	Czechia	-	-	-------------------------------------------------------------------------------------------------------------------------------------GATA------------------------A--A-ACTTCCTCGGATAACTGTGGAAAATCCAGAGCTAATACGTGCAACTGAGTTCCGACCTTGGCGCG----------------------------------------------------------------------------------AGCCTCGGGA----A-GAACG--------------------------------CATTTATTAGATTCAAAACTGACCGACGTACTC--CTGCG---------------GG---A-----T---GCGTCGATCGTCAAATGTTTGATGACTCCGGATA--------------------------ACTTAGC------CGAGCGCT-ACGGTCTTTAGTACCGGCGCCGTATCTTTCA-AGTGTCTGCC--TT-ATCAGCTTTC---GATTGTAG--GTT-------------AAACGCCTACAA-TGGCTGTAACGGG-----TAAC-----GGGG-AAT-CAGGGTT---------------------------CGATTCCGGAG--AGGGAGCCTGAG-AAACGGCTACCACATCTAAGGA-------------AGG-CA-GCAGGCACGCA-AATTACCC----ACTCCCAGC--CCGGGG---AGGTAGTGACGAAAAATAAC-GATG-CGAGACTCTTCC-GA--GG------CCTCGCAAT------------CGGAATGA--------------------GT-TCATTTT----AA-AA-CTTTGG--ACGAGGATCC--ATTGGAGGGCA-AGTCTGGTGCC---AGCAGCCG-CGGTAATTC---CAGCTCCAATAGC--GTATATTAAAGTTGCTGCG------------------GTTAAAAAGCT-CGTAGTTGGATCTCCTAGATCCATTTT--AGTGATCGAGT--CGCTCGTTGAGCTAGC--GTCCT---T-CGTCT-G--GT--------CGCCGGA--ACTAAGGTGTC----GGGATTCCCC---TC-TC--------------------------------------GCG-------TCGATCCGTTTC---------TCCG--CCT------------------CGGTGGA----GCGAG-----CGGCGGCGAGTGTTGGGGGCCTCTCCT--ATTTCGGAG----GA--C------GGTCGG-TC------GTTGT-----CT-TCGAGTA----------------TC-G------CTCTT--TCGCTTGTGGTA-CA--A---------TTAAAAATTTGTCGGCTCG-------------------CTCGGAGTGCTCTTTA--------------------CCGAGT-GTTCCAGGGTG---GCCGACACGTTCACTTT-GAAAAA--------------------ATTAGAGTGCT-TAAAGCGGGCGCATA----------------------------CGCTGCCTGAATGTCTGTGCATGG-AA-TGAAGTAACAGGACCTCGATTCTGTTGTT------TTT-----GT-CGGTTTTATTGAAC
GBNEM7687-23	-	18S-5P	671	Unrecoverable	-	-	------------------------------------------------------------------------CTGCGTACGG---------------C-TCATTAC-ACCA-GCTGT--AA----TTTACTTGACCTTG----------------AC---AA-CCTACTTGGATAACTGTGGTAA-TTCTAGAGCTAA-TACATGCACCAAAGCTCCAAGCTTCG-GC------------------------------------GCGGAGTGCATTTGTTCGCCA-CAAAACCA----------------------------------------------------AGCGC-C-CTCTGGGCGTCCATTGCTGACTCAG--AACAACTC---AGCTGATCGCA--CGGTCTTGTACCGGCGACGTGTCTTTC-AAGTGTCTGCCT--TAT-CAACTTTCGATGGT---------AGTGTAC-CTGACTACCATGGTTGTG--ACGGGTAACGGAGGATCAGGGTTCG-ACTCCG-GAGAAGG--------GGCCTGAGA-AATGGCCACTACGTCTAAGGATGGC-AGCAGGC------------------GCGCAAATTACCCACT-CTCGACT-------------CGAGG---AGGTAGTGA----C---GAGAAATAACAAGACCGTTC------TCACAAGAG-GCCGGTCATT-GGAATGGG-TA-CAACTTAAACC--CTTTAACGAGTATCTAT-------GAGA--GGGCAAGTCTGGTGCCAGCAGCCGCGGTA-ATTCCAGCTCTCAAAA-TGCATAGAATCATTGCT-GCGGTTAAAAAG--CTCGTAGTTGGATCTGTGCTGGTCGCCCGGTCCGCCCGCTGGGCGTGCAC-----TGGTGC-GG--CCGGCTTTC-CTGCC-GGTTTTTGCCCGGCG--T------C---GGC--------------------------------------------------CTTCAC-TGTGTCGGCGTCG---GTGGGCCGGCGA-GTTTACT
GBNEM7686-23	-	18S-5P	586	-	-	-	TCTAGAGCTAATACATGCAGCAGAACTCGGACCTTCGGG-G--------------------------------------------------------------------ACGAGTGCTT-TTATTAGACCAAGACCAATCGGGCTTCG--------------------------------------------------------------------------GCCCGAC-ACTT--GTGGCGACTCTGGATAACTTTGG---GCTGATCGC-A-CGATCTCGT--ATCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTTTCTT-TCAAGTGTCTGCCTTATCAACTT-TCGATGGTAG-GTTATGCGCCTACCATGGTCGTAACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCACTCCCGG-CACGGGG------------AGGTAGTGACGAAAAATAA--CAATACGGGACT----CT-TTTGAGGCCCCGTAATTGGAATGAGTACACTCTAAA-TCCTT-TAA---CGAGGATCCATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTC--CAATAGCG-----TATATTAA-AGTT--GTTGC-GGTT----AAAAGCTC-GT-AGTTGGA---TCTCAGTTCGAGGCTGGCGGTCCACCGTTCGGTGGCTACTGCCTAG--CGCTCA-------------------------------------AC-ATCCTGC-------------CGG-------TTTTC---------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATGCTCTT-CATTG-AGTG-----TCTCGGGT

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Pratylenchus neglectus

Basic Information

Taxonomic Information

Photos (2 photos)

Morphological Features

Host Plants (0 host plants)

Quarantine Status (5 records)

Distribution (10 countries)

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Genomes (1 records)

Transcriptomes (3 records)

DNA Barcodes (587 records)

Literature

State Information