Oryza longistaminata
TaxID: 4528
Basic Information
Oryza longistaminata
Red Rice, longstamen rice, red rice
Oryza longistaminata is a perennial species of grass from the same genus as cultivated rice (O. sativa). It is native to most of sub-Saharan Africa and Madagascar. It has been introduced into the United States, where it is often regarded as a noxious weed. Its common names are longstamen rice and red rice. The host resistance gene, Xa21, from O. longistaminata, has been integrated into the genome of O. sativa as it confers broad resistance to rice blight disease caused by Xanthomonas oryzae pv. oryzae.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Poales
Poaceae
Oryza
longistaminata
Unclassified
Species
nan
d__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Poales;f__Poaceae;g__Oryza;s__Oryza longistaminata
nan
Weeds
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (6 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (38 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Angola | Present | — |
| Burundi | Present | — |
| Benin | Present | — |
| Burkina Faso | Present | — |
| Botswana | Present | — |
| Central African Republic | Present | — |
| Côte d'Ivoire | Present | — |
| Cameroon | Present | — |
| Democratic Republic of the Congo | Present | — |
| Spain | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000789195.1 | Scaffold | 326 | 4 | 93 | - |
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O_longistaminata_v1.0 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| DRR639816 | axillary buds at 3rd node | - | - | 29656877 | Japan:Aichi, Nagoya, Nagoya University | |
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PRJDB20201 DRX620133 DRP013171 weed NextSeq 500 paired end sequencing of SAMD00883898 IRGC110404 {'age': 'fifth leaf stage', 'tissue': 'axillary buds at 3rd node', 'cultivar': 'IRGC110404', 'sample_name': 'OL Uni_GA biological replicate 1', 'geo_loc_name': 'Japan:Aichi, Nagoya, Nagoya University', 'biosamplemodel': 'Plant', 'collection_date': '2020-06-03'} |
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| DRR639817 | axillary buds at 3rd node | - | - | 26268758 | Japan:Aichi, Nagoya, Nagoya University | |
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PRJDB20201 DRX620134 DRP013171 weed NextSeq 500 paired end sequencing of SAMD00883899 IRGC110404 {'age': 'fifth leaf stage', 'tissue': 'axillary buds at 3rd node', 'cultivar': 'IRGC110404', 'sample_name': 'OL Uni_GA biological replicate 2', 'geo_loc_name': 'Japan:Aichi, Nagoya, Nagoya University', 'biosamplemodel': 'Plant', 'collection_date': '2020-06-03'} |
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| DRR639818 | axillary buds at 3rd node | - | - | 26331958 | Japan:Aichi, Nagoya, Nagoya University | |
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PRJDB20201 DRX620135 DRP013171 weed NextSeq 500 paired end sequencing of SAMD00883900 IRGC110404 {'age': 'fifth leaf stage', 'tissue': 'axillary buds at 3rd node', 'cultivar': 'IRGC110404', 'sample_name': 'OL Uni_GA biological replicate 3', 'geo_loc_name': 'Japan:Aichi, Nagoya, Nagoya University', 'biosamplemodel': 'Plant', 'collection_date': '2020-06-03'} |
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DNA Barcodes (3 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| ITSAD4731-14 | - | ITS2 | 229 | Kenya | - | 0.6899181999999999, 37.953094 | |
| GBVD4238-11 | - | matK | 1558 | Mali | - | 17.168146, -4.3464 | |
| GBVD4237-11 | - | matK | 1558 | - | - | - |
Literature
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