Pratylenchus brachyurus

TaxID: 45938

Basic Information

Scientific Name *

Common Name

Root-lesion Nematode

Introduction

Pratylenchus brachyurus is a plant parasitic nematode.

from Wikipedia

Taxonomic Information

Domain/Kingdom

Eukaryota

Phylum

Nematoda

Class

Chromadorea

Order

Rhabditida

Family

Pratylenchidae

Genus

Pratylenchus

Species

brachyurus

Subspecies

-

Photos (0 photos)

No photos available.

Morphological Features

No morphological description available.

Host Plants (0 host plants)

Data sources: EPPO Global Database and relevant literature.

No host plants available.

Quarantine Status (7 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country	Status	Year Added
Angola	Quarantine pests	—
Burkina Faso	Present	—
Ecuador	Quarantine pests	—
Republic of Korea	Quarantine pests	—
French Polynesia	Present	—
Sao Tome and Principe	Quarantine pests	—
Uruguay	Absent	—

Distribution (11 countries)

Data Sources: EPPO Global Database and GBIF.

11

Present

0

Absent

0

Unknown/Other

Country	Status	State
Australia	Present	—
Burkina Faso	Present	—
China	Present	—
Côte d'Ivoire	Present	—
Madagascar	Present	—
Mexico	Present	—
Mali	Present	—
Niger	Present	—
Nigeria	Present	—
Senegal	Present	—

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Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Download CSV

Genomes (0 records)

Data source: NCBI.

No genome records available.

Transcriptomes (1 records)

Data source: NCBI.

Run ID	Tissue	Developmental Stage	Sex	Read Count	Location	Actions
SRR9613859	the whole body	mix-stage	pooled male and female	33691610	not applicable	Download NCBI
BioProject PRJNA551772 Experiment ID SRX6376927 Study ID SRP212341 Category general Title RNA-Seq of mixed stage of Pratylenchus brachyurus Design Description Total RNA was extracted from P. brachyurus, cDNA was snthesized from mRNA, and the library was constructed by PCR amplification Strain rhizosphere soil of corn plants Sample Attributes {'sex': 'pooled male and female', 'tissue': 'the whole body', 'ecotype': 'China', 'isolate': 'rhizosphere soil of corn plants', 'dev_stage': 'mix-stage', 'biosamplemodel': 'Model organism or animal'}

DNA Barcodes (31 records)

View all

Data source: BOLD.

Process ID	BIN	Marker	Length	Country	Date	Lat/Lon	Sequence
GBNEM9943-23	-	18S-5P	804	Unrecoverable	-	-	TACCTGGTTGATCCTGCCAGTAGCA---------------------------------------------TATGCTTGTCTCAAAGATT-AAGCCATGCATGTCTAAGTACG-CACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTC--CTTTGGTCGCTCG-CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACA-TGCCGACGGGCGCTGACCCCCTTC-------GCG--GGG-------------------GGGATGCGTGCATTTATCAGATCAA-AACCAACCCGGTCAGCCTCCTCCCGGCC-------------------C---CGGCCGG-GGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC-CGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAA-CGTCTGCCCTATCAACTTTCGATGGTAGTCGCTG-TGCCTACCATGGTGACCACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGAC-CCGGGGAGGTAGT-GACGAAAAATAACAATACAGGAC--TCTTTCGAGGCCCTGTAATTGGAATG-AGTCCACTTTAAATCCTTCCG-CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA-GCGTATATTAAAGTTGCTGCAGTTAAAAAGCT-CGTAGTTGGATCTTGGGAGCGG-GCGGGCGGTCC--GCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCC----------TTGCCTCTCGGCGCCCC-CTCGATGC----------------------------------------------TCTTAGCTGAGTG-TCC-------CGCGGGGCCCGAAGCGTTTACT
GBNEM9942-23	-	18S-5P	586	-	-	-	TCTAGAGCTAATACATGCAGCAGAACTCGGACCTTCGGG-G--------------------------------------------------------------------ACGAGTGCTT-TTATTAGACCAAGACCAATCGGGCTACG--------------------------------------------------------------------------GCTCGAC-ACTT--GTGGCGACTCTGGATAACTTTGG---GCTGATCGC-A-CGATCTCGT--ATCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTTTCTT-TCAAGTGTCTGCCTTATCAACTT-TCGATGGTAG-GTTATGCGCCTACCATGGTCGTAACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCACTCCCGG-CACGGGG------------AGGTAGTGACGAAAAATAA--CAATACGGGACT----CT-TTTGAGGCCCCGTAATTGGAATGAGTACACTCTAAA-TCCTT-TAA---CGAGGATCCATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTC--CAATAGCG-----TATATTAA-AGTT--GTTGC-GGTT----AAAAGCTC-GT-AGTTGGA---TCTCAGTTCGAGGCTGGCGGTCCACCGTTCGGTGGCTACTGCCTAG--CGCTCA-------------------------------------AC-ATCCTGC-------------CGG-------TTTTC---------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGCTCTT-CATTG-AGTG-----TCTCGGGT
GBNEM9941-23	-	18S-5P	586	-	-	-	TCTAGAGCTAATACATGCAGCAGAACTCGGACCTTCGGG-G--------------------------------------------------------------------ACGAGTGCTT-TTATTAGACCAAGACCAATCGGGCTTCG--------------------------------------------------------------------------GCCCGAC-ACTT--GTGGCGACTCTGGATAACTTTGG---GCTGATCGC-A-CGATCTCGT--ATCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTTTCTT-TCAAGTGTCTGCCTTATCAACTT-TCGATGGTAG-GTTATGCGCCTACCATGGTCGTAACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCACTCCCGG-CACGGGG------------AGGTAGTGACGAAAAATAA--CAATACGGGACT----CT-TTTGAGGCCCCGTAATTGGAATGAGTACACTCTAAA-TCCTT-TAA---CGAGGATCCATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTC--CAATAGCG-----TATATTAA-AGTT--GTTGC-GGTT----AAAAGCTC-GT-AGTTGGA---TCTCAGTTCGAGGCTGGCGGTCCACCGTTCGGTGGCTACTGCCTAG--CGCTCA-------------------------------------AC-ATCCTGC-------------CGG-------TTTTC---------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATGCCCTT-CACTG-AGTG-----TCTCGGGT
GBNEM9940-23	-	18S-5P	586	Japan	-	-	TCTAGAGCTAATACATGCAGCAGAACTCGGACCTTCGGG-G--------------------------------------------------------------------ACGAGTGCTT-TTATTAGACCAAGACCAATCGGGCTTCG--------------------------------------------------------------------------GCCCGAC-ACTT--GTGGCGACTCTGGATAACTTTGG---GCTGATCGC-A-CGATCTCGT--ATCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTTTCTT-TCAAGTGTCTGCCTTATCAACTT-TCGATGGTAG-GTTATGCGCCTACCATGGTCGTAACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCACTCCCGG-CACGGGG------------AGGTAGTGACGAAAAATAA--CAATACGGGACT----CT-TTTGAGGCCCCGTAATTGGAATGAGTACACTCTAAA-TCCTT-TAA---CGAGGATCCATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTC--CAATAGCG-----TATATTAA-AGTT--GTTGC-GGTT----AAAAGCTC-GT-AGTTGGA---TCTCAGTTCGAGGCTGGCGGTCCACCGTTCGGTGGCTACTGCCTAG--CGCTCA-------------------------------------AC-ATCCTGC-------------CGG-------TTTTC---------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGCTCTT-CATTG-AGTG-----TCTCGGGT
GBNEM9939-23	-	18S-5P	804	China	-	-	TACCTGGTTGATCCTGCCAGTAGCA---------------------------------------------TATGCTTGTCTCAAAGATT-AAGCCATGCATGTCTAAGTACG-CACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTC--CTTTGGTCGCTCG-CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACA-TGCCGACGGGCGCTGACCCCCTTC-------GCG--GGG-------------------GGGATGCGTGCATTTATCAGATCAA-AACCAACCCGGTCAGCCCCTCTCCGGCC-------------------C---CGGCCGG-GGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC-CGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAA-CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG-TGCCTACCATGGTGACCACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGAC-CCGGGGAGGTAGT-GACGAAAAATAACAATACAGGAC--TCTTTCGAGGCCCTGTAATTGGAATG-AGTCCACTTTAAATCCTTTAA-CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA-GCGTATCTTAAAGTTGCTGCAGTTAAAAAGCT-CGTAGTTGGATCTTGGGAGCGG-GCGGGCGGTCC--GCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCC----------TTGCCTCTCGGCGCCCC-CTCGATGC----------------------------------------------TCTTAGCTGAGTG-TCC-------CGCGGGGCCCGAAGCGTTTACT
GBNEM9938-23	-	18S-5P	804	China	-	-	TACCTGGTTGATCCTGCCAGTAGCA---------------------------------------------TATGCTTGTCTCAAAGATT-AAGCCATGCATGTCTAAGTACG-CACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTC--CTTTGGTCGCTCG-CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACA-TGCCGACGGGCGCTGACCCCCTTC-------GCG--GGG-------------------GGGATGCGTGCATTTATCAGATCAA-AACCAACCCGGTCAGCCCCTCTCCGGCC-------------------C---CGGCCGG-GGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC-CGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAA-CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG-TGCCTACCATGGTGACCACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGAC-CCGGGGAGGTAGT-GACGAAAAATAACAATACAGGAC--TCTTTCGAGGCCCTGTAATTGGAATG-AGTCCACTTTAAATCCTTTAA-CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA-GCGTATCTTAAAGTTGCTGCAGTTAAAAAGCT-CGTAGTTGGATCTTGGGAGCGG-GCGGGCGGTCC--GCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCC----------TTGCCTCTCGGCGCCCC-CTCGATGC----------------------------------------------TCTTAGCTGAGTG-TCC-------CGCGGGGCCCGAAGCGTTTACT
GBNEM9937-23	-	18S-5P	804	China	-	-	TACCTGGTTGATCCTGCCAGTAGCA---------------------------------------------TATGCTTGTCTCAAAGATT-AAGCCATGCATGTCTAAGTACG-CACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTC--CTTTGGTCGCTCG-CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACA-TGCCGACGGGCGCTGACCCCCTTC-------GCG--GGG-------------------GGGATGCGTGCATTTATCAGATCAA-AACCAACCCGGTCAGCCCCTCTCCGGCC-------------------C---CGGCCGG-GGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC-CGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAA-CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG-TGCCTACCATGGTGACCACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGAC-CCGGGGAGGTAGT-GACGAAAAATAACAATACAGGAC--TCTTTCGAGGCCCTGTAATTGGAATG-AGTCCACTTTAAATCCTTTAA-CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA-GCGTATCTTAAAGTTGCTGCAGTTAAAAAGCT-CGTAGTTGGATCTTGGGAGCGG-GCGGGCGGTCC--GCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCC----------TTGCCTCTCGGCGCCCC-CTCGATGC----------------------------------------------TCTTAGCTGAGTG-TCC-------CGCGGGGCCCGAAGCGTTTACT
GBNEM9936-23	-	18S-5P	804	China	-	-	TACCTGGTTGATCCTGCCAGTAGCA---------------------------------------------TATGCTTGTCTCAAAGATT-AAGCCATGCATGTCTAAGTACG-CACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTC--CTTTGGTCGCTCG-CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACA-TGCCGACGGGCGCTGACCCCCTTC-------GCG--GGG-------------------GGGATGCGTGCATTTATCAGATCAA-AACCAACCCGGTCAGCCCCTCTCCGGCC-------------------C---CGGCCGG-GGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC-CGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAA-CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG-TGCCTACCATGGTGACCACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGAC-CCGGGGAGGTAGT-GACGAAAAATAACAATACAGGAC--TCTTTCGAGGCCCTGTAATTGGAATG-AGTCCACTTTAAATCCTTTAA-CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA-GCGTATCTTAAAGTTGCTGCAGTTAAAAAGCT-CGTAGTTGGATCTTGGGAGCGG-GCGGGCGGTCC--GCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCC----------TTGCCTCTCGGCGCCCC-CTCGATGC----------------------------------------------TCTTAGCTGAGTG-TCC-------CGCGGGGCCCGAAGCGTTTACT
GBNEM9935-23	-	18S-5P	804	China	-	-	TACCTGGTTGATCCTGCCAGTAGCA---------------------------------------------TATGCTTGTCTCAAAGATT-AAGCCATGCATGTCTAAGTACG-CACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTC--CTTTGGTCGCTCG-CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACA-TGCCGACGGGCGCTGACCCCCTTC-------GCG--GGG-------------------GGGATGCGTGCATTTATCAGATCAA-AACCAACCCGGTCAGCCCCTCTCCGGCC-------------------C---CGGCCGG-GGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC-CGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAA-CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG-TGCCTACCATGGTGACCACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGAC-CCGGGGAGGTAGT-GACGAAAAATAACAATACAGGAC--TCTTTCGAGGCCCTGTAATTGGAATG-AGTCCACTTTAAATCCTTTAA-CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA-GCGTATCTTAAAGTTGCTGCAGTTAAAAAGCT-CGTAGTTGGATCTTGGGAGCGG-GCGGGCGGTCC--GCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCC----------TTGCCTCTCGGCGCCCC-CTCGATGC----------------------------------------------TCTTAGCTGAGTG-TCC-------CGCGGGGCCCGAAGCGTTTACT
GBNEM9934-23	-	18S-5P	804	China	-	-	TACCTGGTTGATCCTGCCAGTAGCA---------------------------------------------TATGCTTGTCTCAAAGATT-AAGCCATGCATGTCTAAGTACG-CACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTC--CTTTGGTCGCTCG-CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACA-TGCCGACGGGCGCTGACCCCCTTC-------GCG--GGG-------------------GGGATGCGTGCATTTATCAGATCAA-AACCAACCCGGTCAGCCCCTCTCCGGCC-------------------C---CGGCCGG-GGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC-CGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAA-CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG-TGCCTACCATGGTGACCACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGAC-CCGGGGAGGTAGT-GACGAAAAATAACAATACAGGAC--TCTTTCGAGGCCCTGTAATTGGAATG-AGTCCACTTTAAATCCTTTAA-CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA-GCGTATCTTAAAGTTGCTGCAGTTAAAAAGCT-CGTAGTTGGATCTTGGGAGCGG-GCGGGCGGTCC--GCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCC----------TTGCCTCTCGGCGCCCC-CTCGATGC----------------------------------------------TCTTAGCTGAGTG-TCC-------CGCGGGGCCCGAAGCGTTTACT

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Pratylenchus brachyurus

Basic Information

Taxonomic Information

Photos (0 photos)

Morphological Features

Host Plants (0 host plants)

Quarantine Status (7 records)

Distribution (11 countries)

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Genomes (0 records)

Transcriptomes (1 records)

DNA Barcodes (31 records)

Literature

State Information