Fusarium poae
TaxID: 36050
Basic Information
Fusarium poae
Cob Rot of Maize
nan
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Hypocreales
Nectriaceae
Fusarium
poae
Undefined
Species
nan
d__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__Fusarium poae
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Peru | Absent | — |
Distribution (28 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | — |
| Austria | Present | — |
| Belgium | Present | — |
| Brazil | Present | — |
| Canada | Present | — |
| Switzerland | Present | — |
| China | Present | — |
| Cameroon | Present | — |
| Germany | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_001675295.1 | Scaffold | 46 | 8631 | 8783 | - |
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FPOA1.0 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR3953126 | - | - | - | 115460187 | Belgium:Zwevegem | |
|
PRJNA319914 SRX1977361 SRP079887 fungi RNA-seq of Fusarium poae 2516: complete medium, non DNase treated RNA was extracted with TRIzol (Life Technologies). Subsequently, the crude RNA was purified with the RNA cleanup protocol included in the RNeasy Plant Mini kit (Qiagen) according to the manufacturer’s instructions. RNAseq library preparation was performed using the Illumina TruSeq total RNA sample preparation kit and guidelines. Libraries were pooled equimolarly and loaded on one Illumina HiSeq2000 flowcell lane for 2x100 nt paired end sequencing 2516 {'host': 'Triticum aestivum', 'ploidy': 'haploid', 'isolate': '2516', 'lat_lon': '50.75 N 3.37 E', 'env_biome': 'terrestrial biome', 'env_feature': 'organic feature', 'propagation': 'asexual/sexual', 'env_material': 'organic material', 'geo_loc_name': 'Belgium:Zwevegem', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.host-associated', 'estimated_size': '46MB', 'collection_date': '2011-07'} |
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| SRR3953127 | - | - | - | 58748516 | Belgium:Zwevegem | |
|
PRJNA319914 SRX1977362 SRP079887 fungi RNA-seq of Fusarium poae 2516: complete medium, non DNase treated RNA was extracted with TRIzol (Life Technologies). Subsequently, the crude RNA was purified with the RNA cleanup protocol included in the RNeasy Plant Mini kit (Qiagen) according to the manufacturer’s instructions. RNAseq library preparation was performed using the Illumina TruSeq total RNA sample preparation kit and guidelines. Libraries were pooled equimolarly and loaded on one Illumina HiSeq2000 flowcell lane for 2x100 nt paired end sequencing 2516 {'host': 'Triticum aestivum', 'ploidy': 'haploid', 'isolate': '2516', 'lat_lon': '50.75 N 3.37 E', 'env_biome': 'terrestrial biome', 'env_feature': 'organic feature', 'propagation': 'asexual/sexual', 'env_material': 'organic material', 'geo_loc_name': 'Belgium:Zwevegem', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.host-associated', 'estimated_size': '46MB', 'collection_date': '2011-07'} |
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| SRR3953102 | - | - | - | 3324247 | Belgium:Zwevegem | |
|
PRJNA319914 SRX1977337 SRP079887 fungi RNA-seq of Fusarium poae 2516: 5 stress conditions, DNase treated RNA was extracted with TRIzol (Life Technologies). Subsequently, the crude RNA was purified with the RNA cleanup protocol included in the RNeasy Plant Mini kit (Qiagen) according to the manufacturer’s instructions. RNAseq library preparation was performed using the Illumina TruSeq total RNA sample preparation kit and guidelines. Libraries were pooled equimolarly and loaded on one Illumina HiSeq2000 flowcell lane for 2x100 nt paired end sequencing 2516 {'host': 'Triticum aestivum', 'ploidy': 'haploid', 'isolate': '2516', 'lat_lon': '50.75 N 3.37 E', 'env_biome': 'terrestrial biome', 'env_feature': 'organic feature', 'propagation': 'asexual/sexual', 'env_material': 'organic material', 'geo_loc_name': 'Belgium:Zwevegem', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.host-associated', 'estimated_size': '46MB', 'collection_date': '2011-07'} |
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Literature
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