Pseudomonas savastanoi pv. savastanoi
TaxID: 360920
Basic Information
Pseudomonas savastanoi pv. savastanoi
Olive Knot
Pseudomonas savastanoi is a gram-negative plant pathogenic bacterium that infects a variety of plants. It was once considered a pathovar of Pseudomonas syringae, but following DNA-relatedness studies, it was instated as a new species. It is named after Savastano, a worker who proved between 1887 and 1898 that olive knot are caused by bacteria. The pathovar of greatest economical significance is Pseudomonas savastanoi pv. savastanoi, which causes the disease olive knot. Symptoms include formation of galls on infected trees; tumour formation is induced by indoleacetic acid biosynthesis by the bacteria, in a similar manner to the well-studied crown gall pathogen, Agrobacterium tumefaciens.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
savastanoi
pv. savastanoi
Under_Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas savastanoi
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (1 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Olea europaea subsp. europaea | Host |
Quarantine Status (38 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Burkina Faso | Absent | — |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Chile | Quarantine pests | 2019 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Denmark | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_022026035.1 | Complete Genome | 6 | 6253 | 6253 | - |
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ASM2202603v1 |
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| GCF_000732035.1 | Contig | 6 | 46 | 46 | - |
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PSV1.0 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR30035886 | - | - | - | 11584504 | - | |
|
PRJNA1141921 SRX25511364 SRP523068 RNA-seq of Psv in HIM medium sample 1 Raw reads were preprocessed by NextSeq System Suite v.2.2.0. using specific NGS technology configuration parameters. This preprocessing removes low-quality, ambiguous and low-complexity stretches, linkers, adapters, vector fragments and contaminated sequences, and preserves the longest informative parts of the reads. SeqTrimNext also discarded sequences shorter than 25bp. HIM_4 (Hrp Inducing Medium) {'host': 'Olea europaea', 'strain': 'NCPPB 3335', 'isolate': 'HIM_4 (Hrp Inducing Medium)', 'lat_lon': '36.7161 N 4.4728 W', 'pathovar': 'savastanoi', 'collected_by': 'Universidad de Mlaga', 'geo_loc_name': 'Spain: Malaga', 'host_disease': 'Olive knot disease', 'biosamplemodel': 'Pathogen.cl', 'collection_date': '2022', 'isolation_source': 'Olive Knots'} |
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| SRR30035885 | - | - | - | 10528743 | - | |
|
PRJNA1141921 SRX25511365 SRP523068 RNA-seq of Psv in HIM medium sample 2 Raw reads were preprocessed by NextSeq System Suite v.2.2.0. using specific NGS technology configuration parameters. This preprocessing removes low-quality, ambiguous and low-complexity stretches, linkers, adapters, vector fragments and contaminated sequences, and preserves the longest informative parts of the reads. SeqTrimNext also discarded sequences shorter than 25bp. HIM_5 (Hrp Inducing Medium) {'host': 'Olea europaea', 'strain': 'NCPPB 3335', 'isolate': 'HIM_5 (Hrp Inducing Medium)', 'lat_lon': '36.7161 N 4.4728 W', 'pathovar': 'savastanoi', 'collected_by': 'Universidad de Mlaga', 'geo_loc_name': 'Spain: Malaga', 'host_disease': 'Olive knot disease', 'biosamplemodel': 'Pathogen.cl', 'collection_date': '2022', 'isolation_source': 'Olive Knots'} |
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| SRR30035884 | - | - | - | 10479380 | - | |
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PRJNA1141921 SRX25511366 SRP523068 RNA-seq of Psv in HIM medium sample 3 Raw reads were preprocessed by NextSeq System Suite v.2.2.0. using specific NGS technology configuration parameters. This preprocessing removes low-quality, ambiguous and low-complexity stretches, linkers, adapters, vector fragments and contaminated sequences, and preserves the longest informative parts of the reads. SeqTrimNext also discarded sequences shorter than 25bp. HIM_6 (Hrp Inducing Medium) {'host': 'Olea europaea', 'strain': 'NCPPB 3335', 'isolate': 'HIM_6 (Hrp Inducing Medium)', 'lat_lon': '36.7161 N 4.4728 W', 'pathovar': 'savastanoi', 'collected_by': 'Universidad de Mlaga', 'geo_loc_name': 'Spain: Malaga', 'host_disease': 'Olive knot disease', 'biosamplemodel': 'Pathogen.cl', 'collection_date': '2022', 'isolation_source': 'Olive Knots'} |
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Literature
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