Radopholus similis
TaxID: 46012
Basic Information
Radopholus similis
Burrowing Nematode, banana-root nematode
Radopholus similis is a species of nematode known commonly as the burrowing nematode. It is a parasite of plants, and it is a pest of many agricultural crops. It is an especially important pest of bananas, and it can be found on coconut, avocado, coffee, sugarcane, other grasses, and ornamentals. It is a migratory endoparasite of roots, causing lesions that form cankers. Infected plants experience malnutrition.
from Wikipedia
Taxonomic Information
Eukaryota
Nematoda
Chromadorea
Rhabditida
Pratylenchidae
Radopholus
similis
-
Species
nan
d__Eukaryota;p__Nematoda;c__Chromadorea;o__Rhabditida;f__Pratylenchidae;g__Radopholus;s__Radopholus similis
nan
Nematodes
Photos (3 photos)
Morphological Features
No morphological description available.
Host Plants (41 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Ananas comosus | Host |
| Anthurium | Host |
| Anthurium andraeanum | Host |
| Anubias barteri | Host |
| Areca catechu | Host |
| Areca macrocalyx | Host |
| Areca triandra | Host |
| Aroideae | Host |
| Basella alba | Host |
| Calathea | Host |
Quarantine Status (46 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Antigua and Barbuda | Quarantine pests | — |
| Angola | Quarantine pests | — |
| Argentina | Absent | 2019 |
| Burundi | Quarantine pests | — |
| Burkina Faso | Present | — |
| Bangladesh | Quarantine pests | — |
| Bahrain | Quarantine pests | 2003 |
| Cambodia | Quarantine pests | — |
| Chile | Quarantine pests | 2019 |
| China | Quarantine pests | 2021 |
Distribution (112 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Absent | — |
| American Samoa | Present | — |
| Australia | Present | |
| Austria | Absent | — |
| Burundi | Present | — |
| Belgium | Present | — |
| Benin | Present | — |
| Burkina Faso | Present | — |
| Belize | Present | — |
| Bolivia (Plurinational State of) | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_004764675.1 | Scaffold | 65 | 9 | 13 | - |
|
|
|
ASM476467v1 |
|||||||
Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR15915333 | gland | - | - | 153505 | USA | |
|
PRJNA763912 SRX12205452 SRP337461 general 454 Sequencing of R. similis gland cell RNA-seq library microaspiration of R. similis gland cells, RNA-seq library preparation and sequencing gland cells {'host': 'carrot', 'breed': 'NA', 'tissue': 'gland', 'isolate': 'gland cells', 'geo_loc_name': 'USA', 'biosamplemodel': 'Invertebrate', 'collection_date': '2012-03'} |
||||||
| SRR16215658 | - | - | - | 24310951 | not collected | |
|
PRJNA766655 SRX12497696 SRP340201 general Mixed nematode stages of Radopholus similis Two independent mRNA-seq libraries were generated using 2 g of nematode total RNA and 150 base pair paired-ends were sequenced on an Illumina platform. Hawaii {'rep': 'biological replicate 1', 'host': 'Carrot hairy roots', 'isolate': 'Hawaii', 'lat_lon': 'not collected', 'env_medium': 'not collected', 'geo_loc_name': 'not collected', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': 'not collected', 'env_broad_scale': 'not collected', 'env_local_scale': 'not collected', 'isol_growth_condt': 'In vitro conditions'} |
||||||
| SRR16215657 | - | - | - | 28825272 | USA:Hawaii | |
|
PRJNA766655 SRX12497697 SRP340201 general Mixed nematode stages of Radopholus similis Two independent mRNA-seq libraries were generated using 2 g of nematode total RNA and 150 base pair paired-ends were sequenced on an Illumina platform. Hawaii {'rep': 'biological replicate 2', 'host': 'Carrot hairy roots', 'isolate': 'Hawaii', 'lat_lon': 'not collected', 'env_medium': 'not collected', 'geo_loc_name': 'USA:Hawaii', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': 'not collected', 'env_broad_scale': 'not collected', 'env_local_scale': 'not collected', 'isol_growth_condt': 'In vitro conditions'} |
||||||
DNA Barcodes (14 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBMTG1661-16 | - | ND6 | 414 | - | - | - | |
| GBMTG1661-16 | - | ND5-0 | 1533 | - | - | - | |
| GBMTG1661-16 | - | ND4L | 240 | - | - | - | |
| GBMTG1661-16 | - | ND4 | 1215 | - | - | - | |
| GBMTG1661-16 | - | ND3 | 330 | - | - | - | |
| GBMTG1661-16 | - | ND2 | 822 | - | - | - | |
| GBMTG1661-16 | - | ND1 | 858 | - | - | - | |
| GBMTG1661-16 | - | CYTB | 1551 | - | - | - | |
| GBMTG1661-16 | - | COXIII | 771 | - | - | - | |
| GBMTG1661-16 | - | COII | 675 | - | - | - |
Literature
Fetching literature from NCBI PubMed...
Failed to fetch literature