Contarinia nasturtii
TaxID: 265458
Basic Information
Contarinia nasturtii
swede midge, Gall Midge, Swede Midge
Contarinia nasturtii, the swede midge, is a small fly, the larvae of which infest brassica plants, causing twisting and distortion of the leaf stems and foliage including death of the growing point in seedlings, or damage to developing flower heads. It is native to Europe and Turkey, and has been introduced into North America where it is regarded as an invasive species.
from Wikipedia
Taxonomic Information
Eukaryota
Arthropoda
Insecta
Diptera
Cecidomyiidae
Contarinia
nasturtii
nan
Species
nan
k__Eukaryota;p__Arthropoda;c__Insecta;o__Diptera;f__Cecidomyiidae;g__Contarinia;s__Contarinia nasturtii
nan
Arthropods
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (1 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Brassicaceae | Host |
Quarantine Status (3 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Ecuador | Quarantine pests | — |
| Republic of Korea | Quarantine pests | — |
| Nepal | Quarantine pests | — |
Distribution (17 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Belgium | Present | — |
| Bulgaria | Present | — |
| Belarus | Present | — |
| Canada | Present | — |
| Germany | Present | — |
| Denmark | Present | — |
| Spain | Present | — |
| Finland | Present | — |
| France | Present | — |
| United Kingdom | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_009176525.2 | Scaffold | - | - | - | - | - |
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AAFC_CNas_1.1 |
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| GCA_009176525.2 | Scaffold | 185 | 95 | 4652 | - |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR31025193 | whole females | adult | female | 27402844 | Canada:Saskatoon | |
|
PRJNA565761 SRX26411968 SRP221759 insect SM adult female 100 individuals were pooled and total RNA was extracted using the Trizol and purified using GE Illustra RNAspin mini columns . Sequencing libraries were generated using the Illumina Stranded RNA kit, and sequenced on an Illumina HiSeq 2500. Reads were trimmmed for quality and adaptor sequences using Trimmomatic 0.30 pooled individuals from AAFC saskatoon colony {'sex': 'female', 'host': 'Brassica napus', 'tissue': 'whole females', 'isolate': 'pooled individuals from AAFC saskatoon colony', 'dev_stage': 'adult', 'geo_loc_name': 'Canada:Saskatoon', 'biosamplemodel': 'Invertebrate', 'collection_date': '2019'} |
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| SRR31025192 | whole males | adult | male | 43382379 | Canada:Saskatoon | |
|
PRJNA565761 SRX26411969 SRP221759 insect SM adult male 100 individuals were pooled and total RNA was extracted using the Trizol and purified using GE Illustra RNAspin mini columns . Sequencing libraries were generated using the Illumina Stranded RNA kit, and sequenced on an Illumina HiSeq 2500. Reads were trimmmed for quality and adaptor sequences using Trimmomatic 0.30 pooled individuals from AAFC saskatoon colony {'sex': 'male', 'host': 'Brassica napus', 'tissue': 'whole males', 'isolate': 'pooled individuals from AAFC saskatoon colony', 'dev_stage': 'adult', 'geo_loc_name': 'Canada:Saskatoon', 'biosamplemodel': 'Invertebrate', 'collection_date': '2019'} |
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| SRR31025191 | whole males | adult | male | 23836663 | Canada:Saskatoon | |
|
PRJNA565761 SRX26411970 SRP221759 insect SM adult male 100 individuals were pooled and total RNA was extracted using the Trizol and purified using GE Illustra RNAspin mini columns . Sequencing libraries were generated using the Illumina Stranded RNA kit, and sequenced on an Illumina HiSeq 2500. Reads were trimmmed for quality and adaptor sequences using Trimmomatic 0.30 pooled individuals from AAFC saskatoon colony {'sex': 'male', 'host': 'Brassica napus', 'tissue': 'whole males', 'isolate': 'pooled individuals from AAFC saskatoon colony', 'dev_stage': 'adult', 'geo_loc_name': 'Canada:Saskatoon', 'biosamplemodel': 'Invertebrate', 'collection_date': '2019'} |
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DNA Barcodes (15 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| TZOTB180-17 | BOLD:AAI9372 | COI-5P | 658 | Canada | 2017-08-24 | 43.81915, -79.18643 | |
| TZBCA156-06 | BOLD:AAI9372 | COI-5P | 653 | Canada | 2006-08-03 | - | |
| TZBCA155-06 | BOLD:AAI9372 | COI-5P | 635 | Canada | 2006-08-03 | - | |
| SCAMP7134-24 | BOLD:AAI9372 | COI-5P | 655 | United Kingdom | 2024-07-17 | 52.079575, 0.18256599999999998 | |
| SCAMP6269-24 | BOLD:AAI9372 | COI-5P | 655 | United Kingdom | 2024-06-03 | 52.079575, 0.18256599999999998 | |
| OPPIE887-17 | BOLD:AAI9372 | COI-5P | 658 | Canada | 2014-06-27 | 44.11563, -80.12777 | |
| OPPIE490-17 | BOLD:AAI9372 | COI-5P | 658 | Canada | 2014-06-27 | 44.11563, -80.12777 | |
| OPPIE469-17 | BOLD:AAI9372 | COI-5P | 658 | Canada | 2014-06-27 | 44.11563, -80.12777 | |
| OPPEE6567-17 | BOLD:AAI9372 | COI-5P | 658 | Canada | 2014-06-26 | 44.63367, -80.69829 | |
| OPPEE3979-17 | BOLD:AAI9372 | COI-5P | 658 | Canada | 2014-06-26 | 44.63367, -80.69829 |
Literature
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