Sonchus brachyotus
TaxID: 381730
Scientific Name *
Sonchus brachyotus
Common Name
Seashore Sowthistle, Seashore sowthistle
Introduction
Details
Sonchus brachyotus is an Asian species of plant in the tribe Cichorieae within the family Asteraceae. It is widespread across much of northern Asia, found in Japan, Korea, China, Russia, Mongolia, Thailand, Kazakhstan, Caucasus, Kyrgyzstan, etc.
Sonchus brachyotus is a perennial herb up to 100 cm tall. It produces flat-topped arrays of several flower heads, each head with 170-300 yellow ray flowers but no disc flowers. It grows on grassy slopes on mountains and alongside rivers.
from Wikipedia
Details
Lineage
d__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Asterales;f__Asteraceae;g__Sonchus;s__Sonchus brachyotus
(5 photos)
Details
(0 host plants)
Data sources: EPPO Global Database and relevant literature.
(1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Country
Status
Year Added
Sri Lanka
Quarantine pests
—
(13 countries)
Data Sources: EPPO Global Database and GBIF.
(Latitude and longitude coordinates sourced from GBIF.)
(0 records)
Data source: NCBI.
No genome records available.
(3 records)
Data source: NCBI.
Run ID
Tissue
Developmental Stage
Sex
Read Count
Location
Actions
SRR33456632
leaf
-
-
95737
China:Gansu
Experiment ID
SRX28696618
Title
ITS-Seq of plant pathogen
Design Description
The leaves with clear pathogen symptoms were carefully excised along lesion margins .Total genomic DNA was extracted using the ALFA-SEQ Plant DNA Kit.
Sample Attributes
{'tissue': 'leaf', 'disease': 'leaf spot', 'isolate': 'diseased leaf', 'geo_loc_name': 'China:Gansu', 'biosamplemodel': 'Plant', 'collection_date': '2023-07-15'}
SRR33456631
leaf
-
-
107236
China:Gansu
Experiment ID
SRX28696619
Title
ITS-Seq of plant pathogen
Design Description
The leaves with clear pathogen symptoms were carefully excised along lesion margins .Total genomic DNA was extracted using the ALFA-SEQ Plant DNA Kit.
Sample Attributes
{'tissue': 'leaf', 'disease': 'leaf spot', 'isolate': 'diseased leaf', 'geo_loc_name': 'China:Gansu', 'biosamplemodel': 'Plant', 'collection_date': '2023-07-15'}
SRR33456630
leaf
-
-
122784
China:Gansu
Experiment ID
SRX28696620
Title
ITS-Seq of plant pathogen
Design Description
The leaves with clear pathogen symptoms were carefully excised along lesion margins .Total genomic DNA was extracted using the ALFA-SEQ Plant DNA Kit.
Sample Attributes
{'tissue': 'leaf', 'disease': 'leaf spot', 'isolate': 'diseased leaf', 'geo_loc_name': 'China:Gansu', 'biosamplemodel': 'Plant', 'collection_date': '2023-07-15'}
Data source: BOLD.
Process ID
BIN
Marker
Length
Country
Date
Lat/Lon
Sequence
GENG1295-15
-
rbcL
531
India
2015-02-06
22.87, 73.739
ACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGACTATGAAACCAAGGATACTGATATTTTGGCAGCATTTCGAGTAACTCCTCAACCTGGAGTTCCGCCTGAAGAAGCAGGGGCCGCAGTAGCTGCCGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGACTTACGAGCCTTGATCGTTACAAAGGGCGATGCTATGGAATTGAGCCTGTTCCTGGAGAAGAAAGTCAATTTATTGCTTATGTAGCTTACCCATTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTAGGTAATGTATTTGGGTTCAAAGCCCTGCGTGCTCTACGTCTGGAAGATTTACGAATCCCTACTGCGTATGTTAAAACTTTCCAAGGTCCGCCTCACGGCATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGTCGTCCCCTGTTGGGATGTACTATTAAACCTAAATTGGGGTTATCC
GBVR2449-13
-
matK
1518
South Korea
-
36.402386, 127.762245
ATGGAGAAATTCCAAAGTTATTTAGGGCTAGATAGATCTCAACAACACTACTTCTTATATCCACTTATCTTTCAGGAGTATATTTATGTACTTGCTCATGATCATGGTTTAAATAGATCCATTTTGTTGGAAAATGCAGGTTATGACAATAAATCCAGCTTACTAATTGTGAAACGATTAATCAATCGAATGTATCAACAGAATTATTTGATTCTTTCGGTTAATAATTCTAAACAGACTCCATTTTTGGGGCACAACAAGAATTTTTATTCGCAAGTAATGTCAGAGGTATCTTCAATCATTATGGAAATTCCATTGTCTCTGCGATTAAGATCTTCCTTAGAAAGGAAAGGGGTAGTCAAATCCGATAATTTACGATCCATTCATTCAATATTTTCTTTTTTAGAGGACAACTTTTCACATTTAAATTATGTATTAGATATACTAATACCTTACCCAGCCCATCTGGAAATCTTGGTTCAGGCTCTTCGCTATTGGATAAAAGATCCTTCCTCTTTGCATTTATTAAGATTCTTTCTCCATGAGTGTCATAATTGGGATAGTCTTATTACTTCAAATTCAAAGAAAGGCAGTTCTTCTTTTTCAAAAAGAAATCACAGACTATTCTTCTTCCTATATACTTCTCATGTATGTGAATATGAATCTGGCTTCCTCTTTCTCCGTAACCAATCTTCTCACTTACGATCCACATCTTCTGGAGCTCTTATTGAACGAATATATTTCTATGGAAAAATAGAGCATCTTGCAGAAGTCTTTGCCAGGGCTTTTCAAGCGAATTTATGGTTGTTCAAAGATCCTTTCATGCATTATGTTAGGTATCAAGGAAAATCAATTCTTGCTTCAAAAGGGACGTTTCTTTTGATGAAGAAATGGAAATATTACTTTGTCAATTTTTGGAAATCTTATTTTTACCTGTGGTCTCAACCAGGAAAGATTTATATAAACCAATTATCCAATCATTCCCTTGACTTTCTGGGTTATCGTTCAAGTGTGCGGCTAAAGTCTTCCATGGTACGCAGTCAAATGCTAGAAAATGCATTTCTAATTGAAAATGCTATTAAGAAGTTTGAGACTATTGTTCCAATTATGCCTCTCATTGGATCATTGGCTAAATCTAAATTTTGTAACGCATCGGGGCATCCTATTGGTAAGGTGATTTGGGCCGATTTATCAGATTCTGATATTATTGACCGCTTTGGGCGTATATACAGAAATCTTTCTCATTATCATAGTGGATCTTCAAAAAAAAAGAGTTTGTATCGAGTAAAGTATATACTTCGACTTTCTTGTGCTAGAACTTTAGCTCGTAAGCATAAAAGTACTGTACGTGCTTTTTTGAAAAGATTCGGCTCGGAATTATTGGAAGAATTCTTTACGGAAGAAGAACAAGTTTTTTCCTGGACCTTTCCAAGAGTTTCTTCCATTTCGCGAAGGTTATCTAGAAGGCGGATTTGGTATTTGGATATTATTTGTATCAATGATTTGGCCAATAATGAA
GBVR2448-13
-
matK
1518
South Korea
-
36.402386, 127.762245
ATGGAGAAATTCCAAAGTTATTTAGGGCTAGATAGATCTCAACAACACTACTTCTTATATCCACTTATCTTTCAGGAGTATATTTATGTACTTGCTCATGATCATGGTTTAAATAGATCCATTTTGTTGGAAAATGCAGGTTATGACAATAAATCCAGCTTACTAATTGTGAAACGATTAATCAATCGAATGTATCAACAGAATTATTTGATTCTTTCGGTTAATAATTCTAAACAGACTCCATTTTTGGGGCACAACAAGAATTTTTATTCGCAAGTAATGTCAGAGGTATCTTCAATCATTATGGAAATTCCATTGTCTCTGCGATTAAGATCTTCCTTAGAAAGGAAAGGGGTAGTCAAATCCGATAATTTACGATCCATTCATTCAATATTTTCTTTTTTAGAGGACAACTTTTCACATTTAAATTATGTATTAGATATACTAATACCTTACCCAGCCCATCTGGAAATCTTGGTTCAGGCTCTTCGCTATTGGATAAAAGATCCTTCCTCTTTGCATTTATTAAGATTCTTTCTCCATGAGTGTCATAATTGGGATAGTCTTATTACTTCAAATTCAAAGAAAGGCAGTTCTTCTTTTTCAAAAAGAAATCACAGACTATTCTTCTTCCTATATACTTCTCATGTATGTGAATATGAATCTGGCTTCCTCTTTCTCCGTAACCAATCTTCTCACTTACGATCCACATCTTCTGGAGCTCTTATTGAACGAATATATTTCTATGGAAAAATAGAGCATCTTGCAGAAGTCTTTGCCAGGGCTTTTCAAGCGAATTTATGGTTGTTCAAAGATCCTTTCATGCATTATGTTAGGTATCAAGGAAAATCAATTCTTGCTTCAAAAGGGACGTTTCTTTTGATGAAGAAATGGAAATATTACTTTGTCAATTTTTGGAAATCTTATTTTTACCTGTGGTCTCAACCAGGAAAGATTTATATAAACCAATTATCCAATCATTCCCTTGACTTTCTGGGTTATCGTTCAAGTGTGCGGCTAAAGTCTTCCATGGTACGCAGTCAAATGCTAGAAAATGCATTTCTAATTGAAAATGCTATTAAGAAGTTTGAGACTATTGTTCCAATTATGCCTCTCATTGGATCATTGGCTAAATCTAAATTTTGTAACGCATCGGGGCATCCTATTGGTAAGGTGATTTGGGCCGATTTATCAGATTCTGATATTATTGACCGCTTTGGGCGTATATACAGAAATCTTTCTCATTATCATAGTGGATCTTCAAAAAAAAAGAGTTTGTATCGAGTAAAGTATATACTTCGACTTTCTTGTGCTAGAACTTTAGCTCGTAAGCATAAAAGTACTGTACGTGCTTTTTTGAAAAGATTCGGCTCGGAATTATTGGAAGAATTCTTTACGGAAGAAGAACAAGTTTTTTCCTGGACCTTTCCAAGAGTTTCTTCCATTTCGCGAAGGTTATCTAGAAGGCGGATTTGGTATTTGGATATTATTTGTATCAATGATTTGGCCAATAATGAA
DPC1724-21
-
rbcLa
566
China
2016-08-02
44.24, 90.02
GAAGACATTCATAAACAGCTCTACCGTAGTTTTTAGCGGATAACCCCAATTTAGGTTTAATAGTACATCCCAACAGGGGACGACCATACTTGTTCAATTTATCTCTTTCAACTTGGATGCCGTGAGGCGGACCTTGGAAAGTTTTAACATACGCAGTAGGGATTCGTAAATCTTCCAGACGTAGAGCACGCAGGGCTTTGAACCCAAATACATTACCTACAATGGAAGTAAACATGTTAGTAACAGAACCTTCTTCAAAAAGGTCTAATGGGTAAGCTACATAAGCAATAAATTGACTTTCTTCTCCAGGAACAGGCTCAATTCCATAGCATCGCCCTTTGTAACGATCAAGGCTCGTAAGTCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCGGCAGCTACTGCGGCCCCTGCTTCTTCAGGCGGAACTCCAGGTTGAGGAGTTACTCGAAATGCTGCCAAAATATCAGTATCCTTGGTTTCATAGTCAGGAGTATAATAAGTCAATTTATAATCTTTAACACCAGCTTTGAATCCAACACTTGCTTTAGTCTCT
DPC1724-21
-
matK
783
China
2016-08-02
44.24, 90.02
TATATACTTTACTCGATACAAACTCTTTTTTTTTGAAGATCCACTATGATAATGAGAAAGATTTCTGTATATACGCCCAAAGCGGTCAATAATATCAGAATCTGATAAATCGGCCCAAATCACCTTACCAATAGGATGCCCCGATGCGTTACAAAATTTAGATTTAGCCAATGATCCAATGAGAGGCATAATTGGAACAATAGTCTCAAACTTCTTAATAGCATTTTCAATTAGAAATGCATTTTCTAGCATTTGACTGCGTACCATGGAAGACTTTAGCCGCACACTTGAACGATAACCCAGAAAGTCAAGGGAATGATTGGATAATTGGTTTATATAAATCTTTCCTGGTTGAGACCACAGGTAAAAATAAGATTTCCAGAAATTGACAAAGTAATATTTCCATTTATTCATCAAAAGAAACGTCCCTTTTGAAGCAAGAATTGATTTTCCTTGATACCTAACATAATGCATGAAAGGATCTTTGAACAACCATAAATTCGCTTGAAAAGCCCTGGCAAAGACTTCTGCAAGATGCTCTATTTTTCCATAGAAATATATTCGTTCAATAAGAGCTCCAGAAGATGTGGATCGTAAGTGAGAAGATTGGTTACGGAGAAAGAGGAAGCCAGATTCATATTCACATACATGAGAAGTATATAGGAAGAAGAATAGTCTGTGATTTCTTTTTGAAAAAGAAGAACTGCCTTTCTTTGAATTTGAAGTAATAAGACTATCCCAATTATGACACTCATGGAGAAAGAATCTTAATAAATGCAAAGA
DPC1724-21
-
ITS
629
China
2016-08-02
44.24, 90.02
GTAGGGTCTAAAATGAGAGCTTCCCTCATAGCTAACAACACACAACACAAAACGAAGGTTTTTTCAACCACCACTAGTTGTGCATCCACCATAAGGGGGACTCTTATTTAGGCCAACCGGAAACAAGAACGGGAAGCCATTTTCCGCCCCATCACCATGATTACCCTTTAAGGATGTTTGGCGGGGGGCGACGCGATGCGTGACGCCCAGGCAGGCGTGCCCTCGACCGGATGGCTTCGGGCGCAACTTGCGTTCAAAAACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTTGCTACGTTCTTCATCGATGCGTGAGCCGAGATATCCGTTGCCGAGAGTCGTTATTGTTTTTAAGGAGGCTACCACCTGCATGCACACCGCAAAACGGGGCAAAATCAAGTAGATACCTTCTCTTATTTCATTTTCCTTGGCACATGCCGYGCCGGGGTTTGTTATGGTCCAGTGSGACATCCATGGTACCACAAAAGAGATACCATAGAAACACACCGGATGGTGTTGCTGATCAAAACCTAAGGCCCATCACAACAGCACCAASTTGTATTTACATGTTCACGGGTCGTTCTGCTTTGCAGGGTTCGACAATGATCCTTCCGCA
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