Xanthomonas citri
TaxID: 346
Basic Information
Xanthomonas citri
Citrus Canker, Citrus canker
Xanthomonas citri is a Gram-negative, rod-shaped bacterium. Although it is harmless for humans, it is a phytopathogen, known for being the causing agent of citrus canker. Many pathovars are misclassified as X. cissicola, X. campestris, or X. axonopodis. A 2022 study proposes moving 20 pathovars in these three (including the sole representative of X. cissicola) into X. citri. However, based on the principle of priority, all "X. citri" should become instead named under the earliest-published name, X. cissicola like in GTDB. The two proposals do not affect the independence of X. campestris and X. axonopodis, as their type strains are sufficiently distinct from X. citri/cissicola to be their own species.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Lysobacterales
Lysobacteraceae
Xanthomonas
citri
Unclassified
Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas citri
nan
Prokaryotes
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (17 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| China | Quarantine pests | — |
| Ecuador | Quarantine pests | — |
| Guatemala | Absent | — |
| Croatia | Quarantine pests | — |
| Haiti | Quarantine pests | — |
| Jamaica | Quarantine pests | — |
| Mexico | Quarantine pests | — |
| New Caledonia | Quarantine pests | — |
| New Zealand | Quarantine pests | — |
| Oman | Present | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_015243835.1 | Complete Genome | 5 | 5153 | 5153 | - |
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ASM1524383v1 |
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| GCF_001401545.2 | Contig | 5 | 63 | 63 | - |
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ASM140154v2 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR35797019 | - | - | - | 15097860 | - | |
|
PRJNA1345539 SRX30846314 SRP632698 RNA-seq of Bacteria extracted from the apoplastic washing fluid from Citrus leaves at 5dpi RNA-seq of Bacteria extracted from the apoplastic washing fluid from Citrus leaves at 5dpi XccWT_R3 {'strain': 'Xcc wild type', 'isolate': 'XccWT_R3', 'lat_lon': '48.53729 N 9.03641 E', 'genotype': 'Xcc wild type', 'collected_by': 'Trang Phan', 'geo_loc_name': 'Germany', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2023-03-30', 'isolation_source': 'from Citrus leaves replicate 3'} |
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| SRR35797018 | - | - | - | 18778248 | - | |
|
PRJNA1345539 SRX30846315 SRP632698 RNA-seq of Bacteria extracted from the apoplastic washing fluid from Citrus leaves at 5dpi RNA-seq of Bacteria extracted from the apoplastic washing fluid from Citrus leaves at 5dpi XccWT_R4 {'strain': 'Xcc wild type', 'isolate': 'XccWT_R4', 'lat_lon': '48.53729 N 9.03641 E', 'genotype': 'Xcc wild type', 'collected_by': 'Trang Phan', 'geo_loc_name': 'Germany', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2023-03-30', 'isolation_source': 'from Citrus leaves replicate 4'} |
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| SRR35797017 | - | - | - | 17926097 | - | |
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PRJNA1345539 SRX30846316 SRP632698 RNA-seq of Bacteria extracted from the apoplastic washing fluid from Citrus leaves at 5dpi RNA-seq of Bacteria extracted from the apoplastic washing fluid from Citrus leaves at 5dpi XccWT_R5 {'strain': 'Xcc wild type', 'isolate': 'XccWT_R5', 'lat_lon': '48.53729 N 9.03641 E', 'genotype': 'Xcc wild type', 'collected_by': 'Trang Phan', 'geo_loc_name': 'Germany', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2023-03-30', 'isolation_source': 'from Citrus leaves replicate 5'} |
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Literature
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