Aphelenchoides bicaudatus

TaxID: 293665

Basic Information

Scientific Name *

Common Name

Nematode

Introduction

Aphelenchoides bicaudatus is a nematode parasite of Elaeidobius kamerunicus, Vigna marina, and Agaricus bisporus.

from Wikipedia

Taxonomic Information

Domain/Kingdom

Eukaryota

Phylum

Nematoda

Class

Chromadorea

Order

Rhabditida

Family

Aphelenchoididae

Genus

Aphelenchoides

Species

bicaudatus

Subspecies

-

Photos (0 photos)

No photos available.

Morphological Features

No morphological description available.

Host Plants (0 host plants)

Data sources: EPPO Global Database and relevant literature.

No host plants available.

Quarantine Status (3 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country	Status	Year Added
Ecuador	Quarantine pests	—
Republic of Korea	Quarantine pests	—
French Polynesia	Absent	—

Distribution (21 countries)

Data Sources: EPPO Global Database and GBIF.

21

Present

0

Absent

0

Unknown/Other

Country	Status	State
Australia	Present	—
Brazil	Present	—
China	Present	—
Czechia	Present	—
Germany	Present	—
Spain	Present	—
Gabon	Present	—
India	Present	—
Ireland	Present	—
Italy	Present	—

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Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Download CSV

Genomes (1 records)

Data source: NCBI.

Assembly Accession	Assembly Level	Genome Size(Mb)	Contig N50(Kb)	Scaffold N50(Kb)	BUSCO%	Downloads	Actions
GCA_024699845.1	Contig	46	11905	11905	-	FASTA GFF3
Assembly Name Abicaudatus.fasta

Transcriptomes (1 records)

Data source: NCBI.

Run ID	Tissue	Developmental Stage	Sex	Read Count	Location	Actions
SRR19114849	whole individual	-	-	9551535	-	Download NCBI
BioProject PRJNA834627 Experiment ID SRX15182539 Study ID SRP373882 Category general Title RNAseq of Aphelenchoides bicaudatus Design Description Total RNA was sequenced with HiSeq 2500 Strain Fsh Sample Attributes {'age': 'not collected', 'strain': 'Fsh', 'tissue': 'whole individual', 'biosamplemodel': 'Model organism or animal'}

DNA Barcodes (19 records)

View all

Data source: BOLD.

Process ID	BIN	Marker	Length	Country	Date	Lat/Lon	Sequence
GBNEM1914-23	-	18S-5P	739	Spain	2012-07-24	40.4637, -3.7492	-------------------------------------------AATACCT-T---------AAAACGGTGAA-ACCGCG-AATGGCTCATTAAAT-CAGCTATGGTT-CCTTGGATCGTACA---------------TACTACATGGA--TAACTG-TAGTAATTCTA-GAGCTAATACATGCCACT-AAGCCCTGACCCG-CA-A-----------------------------------GGGGACGGGTGGATTTA-TTAGAACAGAAC---CAACCGGTTG--TG---GC----TTC-GGTC--------------------------------------ATG--GC-CGTTGTACTCTGTGATGACTCTGGATAACTT--TA-CT------GATCGCAGTCGGCC----TTGTGCCGGCGACG-----GATCTT-TCA-AATG-TCTGCCCTATCAA-----TT-GTCGATGGTAGGTGA-TCTGCCTACCAT-GGTGAT---AACGG-GTAACGGGGAAT-CAG------GGTTCGATT-CC---GGAGAGGGAGCC-TGAGA-AACGGCTACCACT-TCTAAG-GAAGGCAGC-AGGC--ACGCAAATTACC---CA-A-TCCCG-GC-----ACG-GGGAGGTAGTGA-CGATAAATACGGATACGGGACT-CAAAA----GAGGCTCCGTAATTCGAATGAGTACAATT-TA----AATCC------TT--TA--ACGAGGA-CCAAC-TGGAGGGCAAG-TCTGGTG-CCAGCAGCCGCG-GTAA--------CTCCA-GCTCCA-GAAGCGTATATTA-AAGTTGTTGCAGTTA-----------------------AAAAGCTCGTAGTTGGATCTGGGTCGCATGGCTACGCGCCGTTGCTTGTGATCTCGGTT---TG-----G----------------TTACGACCGG---------------------------------------------------------------------ATTGAGTTCAT--GAGT-----------------------CGGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTGGTTGTGCAGCCTTTCT--GCCGTGTCTGTTTT-AC---------------------------------------------AGGTGCTG---GCGGATTG--------TT--------G--GGTTCG-----------------------CCCTTCAGT---------------------------------C
GBNEM1913-23	-	18S-5P	781	Unrecoverable	-	-	TCCCTGGTTGATCCTGCCAGTAGTCATATGCT--TGTCTCAAAGAT---------------------TAAGCCATGCATGTCTCAGTACAAGCC----------------------------GCATTAAGGTGAAACCGCG-AATGGCTCA--TT-AAATCAGTTATGGTTCCTTA------GA-----------------------------TCGTACCCACGTTACTTGGATAACTGTGG-TAATTCTAGAGCTAATACATGCAAACAGAGTCCCG-ACCAGAGATGGAAG------------------------------------------GGACGCTTTTAT-TAGA-------------TCAAAACCAATC-GG---A-----------------------------------------TT---G---G-----CTTGTCTGGTCCGTTTGCCTTGGTGACT--CTGAATAACTTTGGGC---TGATCGC--A-CGGTCCTCGTACCGGCGACGCATCTT-TCAAATGTCTGCCTTATCA-ACTGTC-----GATGGTAGG-TTCTGCGCCTACCA-TGGT--TGTAACGGGTAACGG--GGAATCA-GG-GTTCGATTCCGGAG--AGG-GAGC-CTGAGAA-ACGGCTACCAC--ATCCAAGGA-AGGCAGCAG-GC-GCGCAAATTACCCACTCCC-GGCACG----G----------GGAGGTAGTGA-CGAA-----------------------AAATAACGATACGGGACTCATC--C-GAG--GCCCCG-TAATCG-GAATGA-GTACACTTT--AAATC---------CTTTAACGAGTATCTATTGGAGGGCA--A-----GTCTGGTG------CCAGCAGCC---GCGGTAA-T--TCCAGCTCCAATA-G---CGTATATTAAA------GTTGTTGCGG-TTAA-AAAG-CTCGTAGTT-GGATTTGTGTCCCACGCTGTTGGTTCACCGCCCGTCGGTG-TTTAACTGGCATGTATCG-TGGGACGTCC-----TGCCGGTGGGGCGAGCCGAA--GG------------------------------------------------------GGTG----------------------------------CTT----------------------------------------------------------------------------------------------------------------------------------------TCGCGTCCCGAGGCGGACCCCGTTTAAATCCT
GBNEM1912-23	-	18S-5P	708	China	-	-	ACCCATGATTTCTTAGATC-GTA--------------------CAATCCTACTTGGATAACTGCGGTAATTC-TGGAGCTAATACATGCCACAAAGCTCCGACCCCTATG--GGAA---------------------------------------AGAGCGCGTTTATTAGGTCAAAACCAATCGGGTCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG--CGGCCCGTAACTCTGA--TGACTCTGG-ATAACTTCG-----A--GCTGATCGCA----CGGCCTCG-TGCCGGCGACG-TATCTTTCA-AGTGTGTGCCCTATCAACT-TTCGATGGTACGTGATATGCCTACCATGG--TAGTAA--CGGGTAACGGGGAATCAGGGTTCGATTCC--G-GAGAGGGAG-CATGAGA-AACGG--------CTACCACA-TCCAAG---GAAGGCAGCAGG-CGCG-------C-AAATTACCCAATCCCGAC--A-C-------GGGGAGGT--AGTGACGAAAAA----TAACAATA-C---GGGACTCTTTTGAG-GCCCCG-T-AATTGGAAT-GAGTAC---ACTTTAAATCCTTTAAC-GAGGATCAATTGGAGGGCAAGTCT-GGTGCCAGC-AGC-CGC--------------GGTAAT------------------------------------TCMAGCTCC----AATAGCGTATACT--AAAGTT-GTTGCAGTT-----AAAAAGCTCGTAGTTGGATCTCGGGTCGTGCCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGT-----TC---GC-----TTCG------CGGCGCTACTTCTCGG---------C---------------------------------------------------------------------------------------------------------------------------------------G-----CG---------------GCCTAGCCGCCGGTCTTCGCCCGGTGCTCTT-----------------------------------------------------------CGT-TGAGTGCC-TCGCGCGGCCGACAGATTTACTTTGAA---AAAATT--AGAGTGCTCAAAGCAGGCGA-------------CTCGCCTG-TATAGT--CGTGCA-TGG-A
GBNEM1911-23	-	18S-5P	742	Slovakia	2013-07-30	48.669, 19.699	----------------------------------------------------------------------------GCG-AATGGCTCATTAAAT-CAGCTATGGTTT-ATTGGATCATAC---------------CCGTTAAATGGA--TAACTGTAAT-AACTCTA-GAGCTAATACATGCCACG-AAGCCCTGACCCTTA-------------------------------------CGGGGATGGGTGCACTTA-TTAGATCAGAAG---CCAACCGTGTATGGCCGCAA-------------------------------------------------GGCTGTGCATGTTGTCCTTCTGGTGACTCTGGATAATT-GTT-------ACAGATCGCAGTCGGCCT---T-GAGTCGGCGACG-----GGTCC-TT-CAAATG-TCTGCCCTATCA------ACTTTCGATGGTAGGTGAC-CTGCCTACCAT-GGTGA---TAACGG-GTAACGGGGAAT-CAG------GGTTCGATT-CC---GGAGAGGGAGCC-TGAGA-AACGGCTACCACTT-CCAAG-G-AGGCAGC-AGGC--GCGCAAATTACC---CAC--TCCCA-GTTC------GGGAAGGTGGT-GACGAAAAATACCGATGCGGGACTCCTTAA---AGAGGCTCCGTAATCGGAATGAGTGAACTATAA-----ATCC------TT--TC--ACGAGG-ATCAAT-TGGAGGGCAAG-TCTGGTGC-CAGCAGCCGCG-GTAA--------CTCCA-GCTCC-AATAGCGTATATTAA-AGTTGCTGCAGTTA-----------------------AAAAGCTCGTAGTTGGATCTCGGTATCACTGTT----GCCTATTGGTCTTTGGGCGG-----GTAC------------------------------TTA--TCGGTGC-A-T-----AGGCTTTAGC-------------------------------------------------TT--GTG--CTA-------------CCATAGT-------------------------------------------------------------------------------------TGC-------CTGT-------------------------------------------T-----------TCAAGCCG-GTGTGGC-GGTGGTGTCACCTTTCA--GCCATGTCTGTGGTGAAATACCCGCAGGTGTAGTCGA------------------------------------------------------GTGTC-----AGGCGGTG-C
GBNEM1910-23	-	18S-5P	742	Slovakia	2013-07-30	48.669, 19.699	----------------------------------------------------------------------------GCGA-ATGGCTCATTAAAT-CAGCTATGGTTT-ATTGGATCATAC---------------CCGTTAAATGGA--TAACTGTAAT-AACTCTA-GAGCTAATACATGCCACG-AAGCCCTGACCCTT-A------------------------------------CGGGGATGGGTGCACTTA-TTAGATCAGAAG---CCAACCGTGTGTGGCCGCA-------------------------------------------------AGGCTGTGCATGTTGTCCTTCTGGTGACTCTGGATAATT-GTT-------ACAGATCGCAGTCGGCCT---T-GAGTCGGCGACG-----GGTCC-TT-CAAATG-TCTGCCCTATCA------ACTTTCGATGGTAGGTGAC-CTGCCTACCAT-GGTGA---TAACGG-GTAACGGGGAAT-CAG------GGTTCGATT-CC---GGAGAGGGAGCC-TGAGA-AACGGCTACCACTT-CCAAGGG-AGGCAGC-AGGC--GCGCAAATTACC---CAC--TCCCA-GTAC------GGGGAGGTGGT-GACGAAAAATACCGATGCGGGACTCCTTAA---AGAGGCTCCGTAATCGGAATGAGTGAACTATAA-----ATCC------TT--TC--ACGAGG-ATCAAT-TGGAGGGCAAG-TCTGGTGC-CAGCAGCCGCG-GTAA--------CTCCA-GCTCC-AATAGCGTATATTAA-AGTTGCTGCAGTTA-----------------------AAAAGCTCGTAGTTGGATCTCGGTATCACTGTT----GCCTACTGGTTTTTGGGCGG-----GTG---------------------------------C-TTGT-----------CGGTGCATAGG---------------------------------------------------C----TCTGCT-------------T--GTGCTA---------------------------------------------------------------------CCATAGGTG-T-------------------------------------------------------------------CTGTTTCAAGCCG-GTGCGGT-GGCGGTGTCACCTTTCA--GCCATGTCTGTGGTGAAATACCCGCAGGTGTAGGCGA------------------------------------------------------GTGT--C---AGGCG--------------------------------------GTGC
GBNEM1909-23	-	18S-5P	739	Spain	2012-07-24	40.4637, -3.7492	-------------------------------------------AATACCT-T---------AAAACGGTGAA-ACCGCGA-ATGGCTCATTAAAT-CAGCTATGGTTC-CTTGGATCGTACA---------------TACTACATGGA--TAACTG-TAGTAATTCTA-GAGCTAATACATGCCACT-AAGCCCTGACCCGCA--A-----------------------------------GGGGACGGGTGGATTTA-TTAGAACAGAAC---CAACCGGT-T--GT---GGC---TTCGGTCA--------------------------------------TG----GCCGTTGTACTCTGTGATGACTCTGGATAACTT--TA-CT------GATCGCAGTCGGCC----TTGTGCCGGCGACG-----GATCTT-TCA-AATG-TCTGCCCTATCAA-----TT-GTCGATGGTAGGTGA-TCTGCCTACCAT-GGTGAT---AACGG-GTAACGGGGAAT-CAG------GGTTCGATT-CC---GGAGAGGGAGCC-TGAGA-AACGGCTACCACT-TCTAAG-GAAGGCAGC-AGGC--ACGCAAATTACC---CA-A-TCCCA-GC-----ACG-GGGAGGTAGTGA-CGATAAATACGGATACGGGACT-CAAAA----GAGGCTCCGTAATTCGAATGAGTACAATT-TA----AATCC------TT--TA--ACGAGGA-CCAAC-TGGAGGGCAAG-TCTGGTG-CCAGCAGCCGCG-GTAA--------CTCCA-GCTCCA-GAAGCGTATATTA-AAGTTGTTGCAGTTA-----------------------AAAAGCTCGTAGTTGGATCTGGGTCGCATGGCTACGCGCCGTTGCTTGTGATCTCGGT----TT-----G------G--------TT-ACGACCGG---------------------------------------------------------------------ATTGAGTTCAT--GAGT-----------------------CGGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTGGTTGTGCAGCCTTTCT--GCCGTGTCTGTTT-TACAGG---------------------------------------------TGCTG---GCGGAT-T--------GTT----GGGT----TC-G-----------------------CCCTTCAGT---------------------------------C
GBNEM1908-23	-	18S-5P	739	Spain	2012-07-24	40.4637, -3.7492	-------------------------------------------CATACCT-T---------AAAACGGTGAA-ACCGCGA-ATGGCTCATTAAAT-CAGCTATGGTTC-CTTGGATCGTACA---------------TACTACATGGA--TAACTG-TAGTAATTCTA-GAGCTAATACATGCCACT-AAGCCCTGACCCGCA--A-----------------------------------GGGGACGGGTGGATTTA-TTAGAACAGAAC---CAACCGGT-T--GT---GGC---TTCGGTCA--------------------------------------TG----GCCGTTGTACTCTGTGATGACTCTGGATAACTT--TA-CT------GATCGCAGTCGGCC----TTGTGCCGGCGACG-----GATCTT-TCA-AATG-TCTGCCCTATCAA-----TT-GTCGATGGTAGGTGA-TCTGCCTACCAT-GGTGAT---AACGG-GTAACGGGGAAT-CAG------GGTTCGATT-CC---GGAGAGGGAGCC-TGAGA-AACGGCTACCACT-TCTAAG-GAAGGCAGC-AGGC--ACGCAAATTACC---CA-A-TCCCA-GC-----ACG-GGGAGGTAGTGA-CGATAAATACGGATACGGGACT-CAAAA----GAGGCTCCGTAATTCGAATGAGTACAATT-TA----AATCC------TT--TA--ACGAGGA-CCAAC-TGGAGGGCAAG-TCTGGTG-CCAGCAGCCGCG-GTAA--------CTCCA-GCTCCA-GAAGCGTATATTA-AAGTTGTTGCAGTTA-----------------------AAAAGCTCGTAGTTGGATCTGGGTCGCATGGCTACGCGCCGTTGCTTGTGATCTCGGT----TT-----G------G--------TT-ACGACCGG---------------------------------------------------------------------ATTGAGTTCAT--GAGT-----------------------CGGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTGGTTGTGCAGCCTTTCT--GCCGTGTCTGTTT-TACAGG---------------------------------------------TGCTG---GCGGAT-T--------GTT----GGGT----TC-G-----------------------CCCTTCAGT---------------------------------C
GBNEM1907-23	-	18S-5P	695	Spain	2012-07-24	40.4637, -3.7492	---------------------------------------------------------------------------------------------------CTATGGTTC-CTTGGATCGTACA---------------TACTACATGGA--TAACTGTAGTAA-TTCTA-GAGCTAATACATGCCATTA-TGCCCTGCCCCGC-AA------------------------------------GGGAACGGGTGGATTTA-TTAGAACAGAAC---CAACCGGTGGTGGC---------TATGC-T----------------------------------------GC--CGCCGTTGCAATCTGTGATGACTCTGGATAACTTTA---------CTGATCGCAGTCGGCCT----CGAGCTGGCGACG-----GATCTT-TCA-AATG-TCTGCTCTATCAA-----TT-TTCGATGGTAGGTGA-CCTGCCTACCAT-GGTGAT---AACGG-GTAACGGGGAAT-CAG------GGTTCGATT-CC---GGAGAGGGAGCC-TGAGA-AACGGCTACCACT-TCCAAG-GAAGGCAGC-AGGC--ACGCAAATTACC---CA-A-TCCCG-GC-----ACG-GGGAGGTAGTGA-CGAAAAATACAGATACGGGACTCAC-TT----GAGGCTCCGTAATTTGAATGAGTACAATT-TA----AATCC------TT--TA--ACGAGG-ATCAAC-TGGAGGGCAAG-TCTGGTG-CCAGCAGCCGCG-GTAA--------TTCCA-GCTCCA-GAAGCGTATATTA-AAGTTGTTGCAGTTA-----------------------AAAAGCTCGTAGTTGGATCTGGGTCGTATTGCTACGCGCCGTTGCTTGCATCGTTGAC---------CT--GA--------------TCAC---AA--CTGGGTCA--CGTTC---------------------------------------------------------------GTGAGT-----------------------CGGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGGCGGTACAGCCTTTCT--GCTGTGTCTGTTTCG--GCA---------G-------------------------------------GTGCTGACAGT--------CT---------------------------------------------------------------------------------CTG----TTGG-------CATGCT---TCCGGA
GBNEM12722-23	-	18S-5P	804	Ireland	2013-08-09	52.856068, -6.9121165	TACCTGGTTGATCCTGCCAGTAGCA---------------------------------------------TATGCTTGTCTCAAAGATT-AAGCCATGCATGTCTAAGTACG-CACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTC--CTTTGGTCGCTCG-CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACA-TGCCGACGGGCGCTGACCCCCTTC-------GCG--GGG-------------------GGGATGCGTGCATTTATCAGATCAA-AACCAACCCGGTCAGCCCCTCTCCGGCC-------------------C---CGGCCGG-GGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC-CGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAA-CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG-TGCCTACCATGGTGACCACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGAC-CCGGGGAGGTAGT-GACGAAAAATAACAATACAGGAC--TCTTTCGAGGCCCTGTAATTGGAATG-AGTCCACTTTAAATCCTTTAA-CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA-GCGTATCTTAAAGTTGCTGCAGTTAAAAAGCT-CGTAGTTGGATCTTGGGAGCGG-GCGGGCGGTCC--GCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCC----------TTGCCTCTCGGCGCCCC-CTCGATGC----------------------------------------------TCTTAGCTGAGTG-TCC-------CGCGGGGCCCGAAGCGTTTACT
GBNEM12721-23	-	18S-5P	804	Ireland	2013-08-09	52.856068, -6.9121165	TACCTGGTTGATCCTGCCAGTAGCA---------------------------------------------TATGCTTGTCTCAAAGATT-AAGCCATGCATGTCTAAGTACG-CACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTC--CTTTGGTCGCTCG-CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACA-TGCCGACGGGCGCTGACCCCCTTC-------GCG--GGG-------------------GGGATGCGTGCATTTATCAGATCAA-AACCAACCCGGTCAGCCCCTCTCCGGCC-------------------C---CGGCCGG-GGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC-CGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAA-CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG-TGCCTACCATGGTGACCACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGAC-CCGGGGAGGTAGT-GACGAAAAATAACAATACAGGAC--TCTTTCGAGGCCCTGTAATTGGAATG-AGTCCACTTTAAATCCTTTAA-CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA-GCGTATCTTAAAGTTGCTGCAGTTAAAAAGCT-CGTAGTTGGATCTTGGGAGCGG-GCGGGCGGTCC--GCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCC----------TTGCCTCTCGGCGCCCC-CTCGATGC----------------------------------------------TCTTAGCTGAGTG-TCC-------CGCGGGGCCCGAAGCGTTTACT

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Aphelenchoides bicaudatus

Basic Information

Taxonomic Information

Photos (0 photos)

Morphological Features

Host Plants (0 host plants)

Quarantine Status (3 records)

Distribution (21 countries)

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Genomes (1 records)

Transcriptomes (1 records)

DNA Barcodes (19 records)

Literature

State Information