Rubus argutus
TaxID: 59490
Basic Information
Rubus argutus
Prickly Florida Blackberry, prickly Florida blackberry
Rubus argutus is a North American species of prickly bramble in the rose family. It is a perennial plant native to the eastern and south-central United States. Common names are sawtooth blackberry or tall blackberry after its high growth.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Rosales
Rosaceae
Rubus
argutus
Unclassified
Species
nan
d__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Rosales;f__Rosaceae;g__Rubus;s__Rubus argutus
nan
Weeds
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| French Polynesia | Absent | — |
Distribution (4 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| New Zealand | Present | — |
| Poland | Present | — |
| Sweden | Present | — |
| United States of America | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_040183295.1 | Chromosome | 298 | 557 | 38624 | - |
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ASM4018329v1 |
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Transcriptomes (4 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| ERR5386572 | - | - | - | 9560205 | - | |
|
PRJEB36280 ERX5171498 ERP119445 weed Illumina HiSeq 2500 paired end sequencing Illumina sequencing of library DN618561O:C1, constructed from sample accession ERS4266858 for study accession ERP119445. This is part of an Illumina multiplexed sequencing run (33507_2). This submission includes reads tagged with the sequence CAACCGTG. {'subject id': 'dRubArg1', 'common name': 'Rubus argutus', 'external id': 'SAMEA6502410', 'sample name': '8a73eac6-3ea8-11ea-9f22-fa163e2f1184', 'insdc status': 'public', 'submitter id': '8a73eac6-3ea8-11ea-9f22-fa163e2f1184', 'ena-last-update': '2020-01-24T12:53:40Z', 'scientific_name': 'Rubus argutus', 'ena-first-public': '2021-03-02T09:18:26Z', 'insdc center name': 'SC', 'insdc last update': '2020-01-24T12:53:40Z', 'insdc first public': '2021-03-02T09:18:26Z', 'arrayexpress-species': 'Rubus argutus', 'arrayexpress-organism_part': 'leaf'} |
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| ERR5386573 | - | - | - | 11401874 | - | |
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PRJEB36280 ERX5171499 ERP119445 general Illumina HiSeq 2500 paired end sequencing Illumina sequencing of library DN618561O:D1, constructed from sample accession ERS4266860 for study accession ERP119445. This is part of an Illumina multiplexed sequencing run (33507_2). This submission includes reads tagged with the sequence TGGTGCAC. {'subject id': 'dRubArg1', 'common name': 'Rubus argutus', 'external id': 'SAMEA6502412', 'sample name': '8a795254-3ea8-11ea-9f22-fa163e2f1184', 'insdc status': 'public', 'submitter id': '8a795254-3ea8-11ea-9f22-fa163e2f1184', 'ena-last-update': '2020-01-24T12:53:40Z', 'scientific_name': 'Rubus argutus', 'ena-first-public': '2021-03-02T09:18:26Z', 'insdc center name': 'SC', 'insdc last update': '2020-01-24T12:53:40Z', 'insdc first public': '2021-03-02T09:18:26Z', 'arrayexpress-species': 'Rubus argutus', 'arrayexpress-organism_part': 'stem'} |
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| ERR5386574 | - | - | - | 13733309 | - | |
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PRJEB36280 ERX5171500 ERP119445 weed Illumina HiSeq 2500 paired end sequencing Illumina sequencing of library DN618561O:E1, constructed from sample accession ERS4266861 for study accession ERP119445. This is part of an Illumina multiplexed sequencing run (33507_2). This submission includes reads tagged with the sequence CCACAATG. {'subject id': 'dRubArg1', 'common name': 'Rubus argutus', 'external id': 'SAMEA6502413', 'sample name': '8a7eefe8-3ea8-11ea-9f22-fa163e2f1184', 'insdc status': 'public', 'submitter id': '8a7eefe8-3ea8-11ea-9f22-fa163e2f1184', 'ena-last-update': '2020-01-24T12:53:40Z', 'scientific_name': 'Rubus argutus', 'ena-first-public': '2021-03-02T09:18:26Z', 'insdc center name': 'SC', 'insdc last update': '2020-01-24T12:53:40Z', 'insdc first public': '2021-03-02T09:18:26Z', 'arrayexpress-species': 'Rubus argutus', 'arrayexpress-organism_part': 'root'} |
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| SRR21613900 | leaf, fruit, flower, root | Full Growth | - | 143245985 | USA: Virginia, Ashland | |
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PRJNA830911 SRX17614883 SRP397748 weed Iso_Seq Data of Hillquist diploid blackberry from various tissues The total RNA was sent to GenWiz Co. and they prepared unfractioned libraries Hillquist {'age': 'one year', 'tissue': 'leaf, fruit, flower, root', 'isolate': 'PI 553951', 'cultivar': 'Hillquist', 'dev_stage': 'Full Growth', 'geo_loc_name': 'USA: Virginia, Ashland', 'biosamplemodel': 'Plant', 'biomaterial_provider': 'GRINS-USDA Live Repository'} |
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DNA Barcodes (2 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| ITSAA4630-14 | - | ITS2 | 207 | - | - | - | |
| GPAGA065-17 | - | rbcLa | 553 | United States | 2016-05-19 | 32.118973, -81.13462 |
Literature
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