Dichorhavirus orchidaceae
TaxID: 152177
Basic Information
Dichorhavirus orchidaceae
Orchid Fleck Virus
nan
from Wikipedia
Taxonomic Information
unclassified
Negarnaviricota
Monjiviricetes
Mononegavirales
Rhabdoviridae
Dichorhavirus
Dichorhavirus orchidaceae
nan
Species
nan
k__unclassified;p__Negarnaviricota;c__Monjiviricetes;o__Mononegavirales;f__Rhabdoviridae;g__Dichorhavirus;s__Dichorhavirus orchidaceae
nan
Viruses/Viroids
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (9 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Aspidistra elatior | Host |
| Citrus jambhiri | Host |
| Citrus reticulata | Host |
| Citrus sinensis | Host |
| Coelogyne magna | Host |
| Liriope muscari | Host |
| Ophiopogon intermedius | Host |
| Smilax auriculata | Host |
| Veronica spicata | Host |
Quarantine Status (34 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | Quarantine pests | 2019 |
| Belgium | Unknow | 2019 |
| Bulgaria | Quarantine pest ((EU) 2019/2072 Annex II A) | 2019 |
| Switzerland | A1 list | 2019 |
| Cyprus | Quarantine pest ((EU) 2019/2072 Annex II A) | 2019 |
| Czechia | Quarantine pest ((EU) 2019/2072 Annex II A) | 2019 |
| Germany | Unknow | 2019 |
| Denmark | Quarantine pest ((EU) 2019/2072 Annex II A) | 2019 |
| Ecuador | Quarantine pests | — |
| Spain | Quarantine pest ((EU) 2019/2072 Annex II A) | 2019 |
Distribution (8 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Brazil | Present | — |
| Colombia | Present | — |
| France | Transient | — |
| United Kingdom | Present | |
| Mexico | Present | — |
| Panama | Present | — |
| United States of America | Present | |
| South Africa | Present | — |
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000870945.1 | Complete Genome | - | 6 | 6 | - |
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ViralMultiSegProj19969 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR30799884 | - | - | - | 23475312 | USA: California | |
|
PRJNA1158807 SRX26200745 SRP534818 virus CA3Orchid fleck virus The cDNA library was constructed using the Illumina TruSeq Stranded Total RNA Library Prep Plant kit (Illumina, Inc., San Diego, CA, USA) following the modified Illumina Ribo-Zero Total RNA recommendations. The quality and quantity of the unique dual-indexed cDNA libraries were analyzed using a 4200 TapeStation instrument (Agilent, Santa Clara, CA, USA), and Qubit Flex Fluorometer with dsDNA High Sensitivity kit. Pair-end sequencing was conducted using a NextSeq 550 system with 2 75 bp (V2) Hi-output sequencing reagent kits (Illumina, San Diego, CA, USA). CA3 {'host': 'orchid', 'isolate': 'CA3', 'collected_by': 'Tian, Tongyan', 'geo_loc_name': 'USA: California', 'biosamplemodel': 'Viral', 'collection_date': '2022-05', 'isolation_source': 'leaf'} |
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| SRR30799887 | - | - | - | 19604543 | USA: California | |
|
PRJNA1158807 SRX26200746 SRP534818 virus CA4Orchid fleck virus The cDNA library was constructed using the Illumina TruSeq Stranded Total RNA Library Prep Plant kit (Illumina, Inc., San Diego, CA, USA) following the modified Illumina Ribo-Zero Total RNA recommendations. The quality and quantity of the unique dual-indexed cDNA libraries were analyzed using a 4200 TapeStation instrument (Agilent, Santa Clara, CA, USA), and Qubit Flex Fluorometer with dsDNA High Sensitivity kit. Pair-end sequencing was conducted using a NextSeq 550 system with 2 75 bp (V2) Hi-output sequencing reagent kits (Illumina, San Diego, CA, USA). CA4 {'host': 'orchid', 'isolate': 'CA4', 'collected_by': 'Tian, Tongyan', 'geo_loc_name': 'USA: California', 'biosamplemodel': 'Viral', 'collection_date': '2023-05', 'isolation_source': 'leaf'} |
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| SRR30799883 | - | - | - | 24331027 | USA: California | |
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PRJNA1158807 SRX26200747 SRP534818 virus CA5Orchid fleck virus The cDNA library was constructed using the Illumina TruSeq Stranded Total RNA Library Prep Plant kit (Illumina, Inc., San Diego, CA, USA) following the modified Illumina Ribo-Zero Total RNA recommendations. The quality and quantity of the unique dual-indexed cDNA libraries were analyzed using a 4200 TapeStation instrument (Agilent, Santa Clara, CA, USA), and Qubit Flex Fluorometer with dsDNA High Sensitivity kit. Pair-end sequencing was conducted using a NextSeq 550 system with 2 75 bp (V2) Hi-output sequencing reagent kits (Illumina, San Diego, CA, USA). CA5 {'host': 'orchid', 'isolate': 'CA5', 'collected_by': 'Tian, Tongyan', 'geo_loc_name': 'USA: California', 'biosamplemodel': 'Viral', 'collection_date': '2024-05', 'isolation_source': 'leaf'} |
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Literature
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