Diaporthe longicolla
TaxID: 54899
Basic Information
Diaporthe longicolla
Seed Decay of Soybean
nan
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Diaporthales
Diaporthaceae
Diaporthe
longicolla
nan
Species
nan
k__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Diaporthales;f__Diaporthaceae;g__Diaporthe;s__Diaporthe longicolla
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Mexico | Quarantine pest | 2018 |
Distribution (9 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Bosnia and Herzegovina | Present | — |
| Brazil | Present | — |
| Canada | Present | — |
| China | Present | — |
| Colombia | Present | — |
| India | Present | — |
| Republic of Korea | Present | — |
| Serbia | Present | — |
| United States of America | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000800745.1 | Scaffold | 64 | 91 | 204 | - |
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ASM80074v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR7480200 | - | - | - | 1021112 | USA:Arkansas, Crawford county | |
|
PRJNA480003 SRX4349643 SRP152568 fungi RNA-seq of Phomopsis longicolla wild type during seed colonization Phomopsis longicolla wild-type and hap3 mutant were inoculated on soybean seeds of cultivar Traff. Each strain had three 24-seed replicates. In order to enrich samples for P. longicolla tissue, six days after inoculation seed coats were carefully removed from colonized seeds, pooled by sample, flash frozen and manually ground in liquid nitrogen, and total RNA was extracted with Ribozol (Amresco, Solon, OH, USA). PL2010AR {'isolate': 'PL2010AR', 'collected_by': 'John C. Rupe', 'geo_loc_name': 'USA:Arkansas, Crawford county', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2010', 'isolation_source': 'Soybean plant'} |
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| SRR7480199 | - | - | - | 1298400 | USA:Arkansas, Crawford county | |
|
PRJNA480003 SRX4349644 SRP152568 fungi RNA-seq of Phomopsis longicolla wild type during seed colonization Phomopsis longicolla wild-type and hap3 mutant were inoculated on soybean seeds of cultivar Traff. Each strain had three 24-seed replicates. In order to enrich samples for P. longicolla tissue, six days after inoculation seed coats were carefully removed from colonized seeds, pooled by sample, flash frozen and manually ground in liquid nitrogen, and total RNA was extracted with Ribozol (Amresco, Solon, OH, USA). PL2010AR {'isolate': 'PL2010AR', 'collected_by': 'John C. Rupe', 'geo_loc_name': 'USA:Arkansas, Crawford county', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2010', 'isolation_source': 'Soybean plant'} |
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| SRR7480198 | - | - | - | 1082782 | USA:Arkansas, Crawford county | |
|
PRJNA480003 SRX4349645 SRP152568 fungi RNA-seq of Phomopsis longicolla wild type during seed colonization Phomopsis longicolla wild-type and hap3 mutant were inoculated on soybean seeds of cultivar Traff. Each strain had three 24-seed replicates. In order to enrich samples for P. longicolla tissue, six days after inoculation seed coats were carefully removed from colonized seeds, pooled by sample, flash frozen and manually ground in liquid nitrogen, and total RNA was extracted with Ribozol (Amresco, Solon, OH, USA). PL2010AR {'isolate': 'PL2010AR', 'collected_by': 'John C. Rupe', 'geo_loc_name': 'USA:Arkansas, Crawford county', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2010', 'isolation_source': 'Soybean plant'} |
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DNA Barcodes (34 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBDIA874-13 | - | ITS | 512 | United States | - | - | |
| GBDIA873-13 | - | ITS | 512 | United States | - | - | |
| GBDIA872-13 | - | ITS | 512 | United States | - | - | |
| GBDIA871-13 | - | ITS | 512 | United States | - | - | |
| GBDIA870-13 | - | ITS | 512 | United States | - | - | |
| GBDIA869-13 | - | ITS | 512 | United States | - | - | |
| GBDIA868-13 | - | ITS | 512 | United States | - | - | |
| GBDIA835-13 | - | ITS | 523 | - | - | - | |
| GBDIA834-13 | - | ITS | 521 | - | - | - | |
| GBDIA833-13 | - | ITS | 497 | - | - | - |
Literature
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