Oryza punctata
TaxID: 4537
Basic Information
Oryza punctata
Red Rice, red rice
Oryza punctata is an annual grass in the rice genus Oryza, also known as red rice, related to cultivated rice O. sativa. O. punctata forms clumps or tussocks from 50 C120 cm tall. It is a native to tropical Africa and Madagascar but is also found in Thailand and other parts of Indochina. O. punctata is a weed species in commercial rice growing operations although it appears to be rare in its native range. O. punctata has an IUCN status of least concern. It is not generally eaten or used as fodder by farmers but there is some evidence that it has been used as such during periods of famine. Due to the importance of the crop varieties of rice (Oryza. sativa and O. glaberrima) globally, the evolution of the Oryza genus as a whole has been studied extensively. A lot of information about O. punctata has been elucidated as a secondary benefit to this commercial research. O. punctata evolved some 5 million years ago in the second of two rapid radiation events that occurred in the Oryza L. genus.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Poales
Poaceae
Oryza
punctata
Unclassified
Species
nan
d__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Poales;f__Poaceae;g__Oryza;s__Oryza punctata
nan
Weeds
Photos (3 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (6 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (29 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Angola | Present | — |
| Benin | Present | — |
| Central African Republic | Present | — |
| Côte d'Ivoire | Present | — |
| Cameroon | Present | — |
| Democratic Republic of the Congo | Present | — |
| Spain | Present | — |
| Ghana | Present | — |
| Guinea | Present | — |
| India | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000573905.2 | Chromosome | 422 | 18594 | 18594 | - |
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OpunRS2 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR31112261 | leaf | seedling | - | 22303923 | Kenya | |
|
PRJNA1175549 SRX26494571 SRP540248 weed RNA sequencing of wild rice RNA sequencing of Oryza punctata wild {'age': '30d', 'tissue': 'leaf', 'ecotype': 'wild', 'isolate': 'leaf_1', 'cultivar': 'wild', 'dev_stage': 'seedling', 'geo_loc_name': 'Kenya', 'biosamplemodel': 'Plant', 'collection_date': '2020-08-25'} |
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| SRR31112260 | leaf | seedling | - | 23802585 | Kenya | |
|
PRJNA1175549 SRX26494572 SRP540248 weed RNA sequencing of wild rice RNA sequencing of Oryza punctata wild {'age': '30d', 'tissue': 'leaf', 'ecotype': 'wild', 'isolate': 'leaf_2', 'cultivar': 'wild', 'dev_stage': 'seedling', 'geo_loc_name': 'Kenya', 'biosamplemodel': 'Plant', 'collection_date': '2020-08-25'} |
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| SRR31112259 | leaf | seedling | - | 20522189 | Kenya | |
|
PRJNA1175549 SRX26494573 SRP540248 weed RNA sequencing of wild rice RNA sequencing of Oryza punctata wild {'age': '30d', 'tissue': 'leaf', 'ecotype': 'wild', 'isolate': 'leaf_3', 'cultivar': 'wild', 'dev_stage': 'seedling', 'geo_loc_name': 'Kenya', 'biosamplemodel': 'Plant', 'collection_date': '2020-08-25'} |
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DNA Barcodes (26 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| ITSAH2119-14 | - | ITS2 | 216 | - | - | - | |
| ITSAH2118-14 | - | ITS2 | 216 | - | - | - | |
| ITSAH2117-14 | - | ITS2 | 216 | - | - | - | |
| ITSAH2116-14 | - | ITS2 | 216 | - | - | - | |
| ITSAH2115-14 | - | ITS2 | 216 | - | - | - | |
| ITSAH2114-14 | - | ITS2 | 216 | - | - | - | |
| ITSAH2113-14 | - | ITS2 | 216 | - | - | - | |
| ITSAH2112-14 | - | ITS2 | 216 | - | - | - | |
| ITSAH2111-14 | - | ITS2 | 216 | - | - | - | |
| ITSAC4121-14 | - | ITS2 | 215 | - | - | - |
Literature
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