Diaporthe amygdali
TaxID: 1214568
Basic Information
Diaporthe amygdali
Canker: Peach
nan
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Diaporthales
Diaporthaceae
Diaporthe
amygdali
nan
Species
nan
k__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Diaporthales;f__Diaporthaceae;g__Diaporthe;s__Diaporthe amygdali
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (2 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (8 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Australia | Present | — |
| Canada | Present | — |
| China | Present | — |
| Spain | Present | — |
| Republic of Korea | Present | — |
| New Zealand | Present | — |
| Portugal | Present | — |
| United States of America | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_026229845.1 | Scaffold | 51 | 1008 | 1008 | - |
|
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ASM2622984v1 |
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| GCA_021655905.1 | Contig | 49 | 6154 | 6154 | - |
|
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|
ASM2165590v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR19879466 | - | - | - | 21221164 | not collected | |
|
PRJNA853397 SRX15922841 SRP383856 fungi A1 Hyphae blocks of Phomopsis amygdali were cultured in liquid PDA medium for 36 h, and then W10-Sp1 protein solution treated for another 36 h Hyphae blocks of Phomopsis amygdali were cultured in liquid PDA medium for 36 h, and then W10-Sp1 pr {'strain': 'mycelium of Phomopsis amygdali', 'isolate': 'Hyphae blocks of Phomopsis amygdali were cultured in liquid PDA medium for 36 h, and then W10-Sp1 protein solution treated for another 36 h', 'lat_lon': 'not collected', 'replicate': 'biological replicate 1', 'collected_by': 'Peach Disease Research Laboratory, College of Horticulture and Plant Protection, Yangzhou University, China', 'geo_loc_name': 'not collected', 'biosamplemodel': 'Pathogen.env', 'collection_date': 'not collected', 'isolation_source': 'the Phoopsis amygdali was isolated from the peach twigs with the peach shoot blight'} |
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| SRR19879465 | - | - | - | 22577824 | not collected | |
|
PRJNA853397 SRX15922842 SRP383856 fungi A2 Hyphae blocks of Phomopsis amygdali were cultured in liquid PDA medium for 36 h, and then W10-Sp1 protein solution treated for another 36 h Hyphae blocks of Phomopsis amygdali were cultured in liquid PDA medium for 36 h, and then W10-Sp1 pr {'strain': 'mycelium of Phomopsis amygdali', 'isolate': 'Hyphae blocks of Phomopsis amygdali were cultured in liquid PDA medium for 36 h, and then W10-Sp1 protein solution treated for another 36 h', 'lat_lon': 'not collected', 'replicate': 'biological replicate 2', 'collected_by': 'Peach Disease Research Laboratory, College of Horticulture and Plant Protection, Yangzhou University, China', 'geo_loc_name': 'not collected', 'biosamplemodel': 'Pathogen.env', 'collection_date': 'not collected', 'isolation_source': 'the Phoopsis amygdali was isolated from the peach twigs with the peach shoot blight'} |
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| SRR19879464 | - | - | - | 20951926 | not collected | |
|
PRJNA853397 SRX15922843 SRP383856 fungi A3 Hyphae blocks of Phomopsis amygdali were cultured in liquid PDA medium for 36 h, and then W10-Sp1 protein solution treated for another 36 h Hyphae blocks of Phomopsis amygdali were cultured in liquid PDA medium for 36 h, and then W10-Sp1 pr {'strain': 'mycelium of Phomopsis amygdali', 'isolate': 'Hyphae blocks of Phomopsis amygdali were cultured in liquid PDA medium for 36 h, and then W10-Sp1 protein solution treated for another 36 h', 'lat_lon': 'not collected', 'replicate': 'biological replicate 3', 'collected_by': 'Peach Disease Research Laboratory, College of Horticulture and Plant Protection, Yangzhou University, China', 'geo_loc_name': 'not collected', 'biosamplemodel': 'Pathogen.env', 'collection_date': 'not collected', 'isolation_source': 'the Phoopsis amygdali was isolated from the peach twigs with the peach shoot blight'} |
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DNA Barcodes (25 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBDIA877-13 | - | ITS | 569 | Spain | - | 40.36501, -3.6516252 | |
| GBDIA844-13 | - | ITS | 610 | - | - | - | |
| GBDIA843-13 | - | ITS | 610 | - | - | - | |
| GBDIA840-13 | - | ITS | 560 | - | - | - | |
| GBDIA809-13 | - | ITS | 536 | - | - | - | |
| GBDIA2031-13 | - | ITS | 583 | - | - | - | |
| GBDIA2030-13 | - | ITS | 583 | - | - | - | |
| GBDIA2029-13 | - | ITS | 581 | - | - | - | |
| GBDIA2028-13 | - | ITS | 583 | Portugal | - | 39.675292999999996, -7.9336624 | |
| GBDIA2027-13 | - | ITS | 583 | Portugal | - | 39.675292999999996, -7.9336624 |
Literature
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