Xanthomonas cucurbitae
TaxID: 56453
Basic Information
Xanthomonas cucurbitae
Bacterial Spot of Pumpkin
Xanthomonas cucurbitae is a species of Gram-negative bacteria that is a plant pathogen. It is the causal agent of bacterial spot disease of cucurbits, infecting plants like pumpkins, squash, and cucumbers. The disease can cause significant yield losses in commercial crops up to 100% in some fields particularly in pumpkin production in the Midwestern United States. The bacterium was first identified on 'Hubbard squash' in New York in 1926. It has since been found worldwide, with the first confirmed report in Europe occurring in Reggio Emilia, Italy, in 2018.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Lysobacterales
Lysobacteraceae
Xanthomonas
cucurbitae
nan
Species
nan
k__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas cucurbitae
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (11 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Chile | Quarantine pests | 2019 |
| Cuba | Present | — |
| Ecuador | Quarantine pests | — |
| Mexico | Quarantine pests | 2018 |
| Nepal | Quarantine pests | — |
| Panama | Quarantine pests | — |
| Peru | Absent | — |
| French Polynesia | Quarantine pests | — |
| Sudan | Quarantine pests | — |
| Seychelles | Quarantine pests | — |
Distribution (2 countries)
Data Sources: EPPO Global Database and GBIF.
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_009883735.1 | Complete Genome | 4 | 4601 | 4601 | - |
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ASM988373v1 |
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| GCF_002939885.1 | Scaffold | 4 | 105 | 105 | - |
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ASM293988v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR10200227 | - | - | - | 104798 | USA: New York | |
|
PRJNA498325 SRX6920370 SRP223119 bacteria RNA-Seq of Xanthomonas cucurbitae: peptone-sucrose media RNA was extracted using E.Z.N.A. total RNA kit from Xanthomonas cucurbitae grown on nutrient sufficient peptone-sucrose media 24 hours prior to harvesting. Ribosomal RNA was removed with the Ribo-Zero rRNA Removal Kit for Gram-Negative Bacteria and libraries were prepared using the TruSeq Stranded mRNA Library Prep (Illumina). Paired-end 250 bp reads were sequenced using the MiSeq Nano platform. ATCC 23378 {'host': 'Cucurbita maxima', 'strain': 'ATCC 23378', 'sample_type': 'cell culture', 'collected_by': 'MP Starr', 'geo_loc_name': 'USA: New York', 'identified_by': 'Bryan', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '1926', 'culture_collection': 'ATCC:23378', 'biomaterial_provider': 'ATCC'} |
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| SRR10200226 | - | - | - | 76663 | USA: New York | |
|
PRJNA498325 SRX6920371 SRP223119 bacteria RNA-Seq of Xanthomonas cucurbitae: peptone-sucrose media RNA was extracted using E.Z.N.A. total RNA kit from Xanthomonas cucurbitae grown on nutrient sufficient peptone-sucrose media 24 hours prior to harvesting. Ribosomal RNA was removed with the Ribo-Zero rRNA Removal Kit for Gram-Negative Bacteria and libraries were prepared using the TruSeq Stranded mRNA Library Prep (Illumina). Paired-end 250 bp reads were sequenced using the MiSeq Nano platform. ATCC 23378 {'host': 'Cucurbita maxima', 'strain': 'ATCC 23378', 'sample_type': 'cell culture', 'collected_by': 'MP Starr', 'geo_loc_name': 'USA: New York', 'identified_by': 'Bryan', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '1926', 'culture_collection': 'ATCC:23378', 'biomaterial_provider': 'ATCC'} |
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| SRR10200225 | - | - | - | 87342 | USA: New York | |
|
PRJNA498325 SRX6920372 SRP223119 bacteria RNA-Seq of Xanthomonas cucurbitae: peptone-sucrose media RNA was extracted using E.Z.N.A. total RNA kit from Xanthomonas cucurbitae grown on nutrient sufficient peptone-sucrose media 24 hours prior to harvesting. Ribosomal RNA was removed with the Ribo-Zero rRNA Removal Kit for Gram-Negative Bacteria and libraries were prepared using the TruSeq Stranded mRNA Library Prep (Illumina). Paired-end 250 bp reads were sequenced using the MiSeq Nano platform. ATCC 23378 {'host': 'Cucurbita maxima', 'strain': 'ATCC 23378', 'sample_type': 'cell culture', 'collected_by': 'MP Starr', 'geo_loc_name': 'USA: New York', 'identified_by': 'Bryan', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '1926', 'culture_collection': 'ATCC:23378', 'biomaterial_provider': 'ATCC'} |
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Literature
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