Fusarium graminearum
TaxID: 5518
Basic Information
Fusarium graminearum
Gibberella Stalk Rot
Gibberella zeae, also known by the name of its anamorph Fusarium graminearum, is a fungal plant pathogen which causes fusarium head blight (FHB), a devastating disease on wheat and barley. The pathogen is responsible for billions of dollars in economic losses worldwide each year. Infection causes shifts in the amino acid composition of wheat, resulting in shriveled kernels and contaminating the remaining grain with mycotoxins, mainly deoxynivalenol (DON), which inhibits protein biosynthesis; and zearalenone, an estrogenic mycotoxin. These toxins cause vomiting, liver damage, and reproductive defects in livestock, and are harmful to humans through contaminated food. Despite great efforts to find resistance genes against F. graminearum, no completely resistant variety is currently available. Research on the biology of F. graminearum is directed towards gaining insight into more details about the infection process and reveal weak spots in the life cycle of this pathogen to develop fungicides that can protect wheat from scab infection.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Hypocreales
Nectriaceae
Fusarium
graminearum
nan
Species
nan
k__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__Fusarium graminearum
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (4 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (49 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Algeria | Present | — |
| Argentina | Present | — |
| Australia | Present | — |
| Austria | Present | — |
| Belgium | Present | — |
| Brazil | Present | — |
| Central African Republic | Present | — |
| Cambodia | Present | — |
| Canada | Present | — |
| Switzerland | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000599445.1 | Chromosome | 36 | 258 | 8791 | - |
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CS3005v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR36590262 | - | - | - | 22410455 | not applicable | |
|
PRJNA1393205 SRX31602907 SRP657833 fungi RNA-seq of F. graminearum PH-1 pregnenolone-treated replicate 1 Total RNA was extracted from Fusarium graminearum PH-1 mycelia grown in CMC medium for 72 hours with or without 10 mg/L pregnenolone. Three biological replicates per condition. mRNA was enriched by polyA selection (or rRNA depletion), followed by cDNA synthesis and paired-end sequencing on BGISEQ-500. Laboratory strain PH-1, a standard wild-type isolate of Fusarium graminearum maintained in pure cult {'strain': 'Fg_PH1_Preg_Rep1', 'isolate': 'Laboratory strain PH-1, a standard wild-type isolate of Fusarium graminearum maintained in pure culture', 'sample_type': 'cell culture', 'biosamplemodel': 'Microbe, viral or environmental'} |
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| SRR36590261 | - | - | - | 22393024 | not applicable | |
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PRJNA1393205 SRX31602908 SRP657833 fungi RNA-seq of F. graminearum PH-1 pregnenolone-treated replicate 2 Total RNA was extracted from Fusarium graminearum PH-1 mycelia grown in CMC medium for 72 hours with or without 10 mg/L pregnenolone. Three biological replicates per condition. mRNA was enriched by polyA selection (or rRNA depletion), followed by cDNA synthesis and paired-end sequencing on BGISEQ-500. Laboratory strain PH-1, a standard wild-type isolate of Fusarium graminearum maintained in pure cult {'strain': 'Fg_PH1_Preg_Rep2', 'isolate': 'Laboratory strain PH-1, a standard wild-type isolate of Fusarium graminearum maintained in pure culture', 'sample_type': 'cell culture', 'biosamplemodel': 'Microbe, viral or environmental'} |
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| SRR36590260 | - | - | - | 22401615 | not applicable | |
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PRJNA1393205 SRX31602909 SRP657833 fungi RNA-seq of F. graminearum PH-1 pregnenolone-treated replicate 3 Total RNA was extracted from Fusarium graminearum PH-1 mycelia grown in CMC medium for 72 hours with or without 10 mg/L pregnenolone. Three biological replicates per condition. mRNA was enriched by polyA selection (or rRNA depletion), followed by cDNA synthesis and paired-end sequencing on BGISEQ-500. Laboratory strain PH-1, a standard wild-type isolate of Fusarium graminearum maintained in pure cult {'strain': 'Fg_PH1_Preg_Rep3', 'isolate': 'Laboratory strain PH-1, a standard wild-type isolate of Fusarium graminearum maintained in pure culture', 'sample_type': 'cell culture', 'biosamplemodel': 'Microbe, viral or environmental'} |
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DNA Barcodes (146 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| JRPAA9689-15 | - | COI-5P | 1590 | - | - | - | |
| JRPAA4218-15 | - | COI-5P | 1590 | - | - | - | |
| HY076-07 | - | CYTB | 278 | United States | 1980-01-01 | - | |
| HY048-07 | - | COI-5P | 591 | United States | 1980-01-01 | - | |
| GBHYP9112-13 | - | ITS | 545 | - | - | - | |
| GBHYP9111-13 | - | ITS | 575 | - | - | - | |
| GBHYP7937-13 | - | ITS | 522 | - | - | - | |
| GBHYP7936-13 | - | ITS | 525 | - | - | - | |
| GBHYP7633-13 | - | ITS | 528 | - | - | - | |
| GBHYP6966-13 | - | ITS | 456 | - | - | - |
Literature
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