Phytophthora cactorum
TaxID: 29920
Basic Information
Phytophthora cactorum
Crown Rot of Apple, Stengelvoetrot
Phytophthora cactorum is a fungal-like plant pathogen belonging to the Oomycota phylum. It is the causal agent of root rot on rhododendron and many other species, as well as leather rot of strawberries.
from Wikipedia
Taxonomic Information
Eukaryota
Oomycota
Peronosporomycetes
Peronosporales
Peronosporaceae
Phytophthora
cactorum
Undefined
Species
nan
d__Eukaryota;p__Oomycota;c__Peronosporomycetes;o__Peronosporales;f__Peronosporaceae;g__Phytophthora;s__Phytophthora cactorum
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (12 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Acer x freemanii | Host |
| Betula | Host |
| Cydonia oblonga | Host |
| Eriobotrya japonica | Host |
| Fragaria x ananassa | Host |
| Juglans regia | Host |
| Lavandula x intermedia | Host |
| Maclura pomifera | Host |
| Malus domestica | Host |
| Prunus | Host |
Quarantine Status (40 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Denmark | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Ecuador | Quarantine pests | — |
| Egypt | Regulated non-quarantine pest | 2018 |
Distribution (57 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | |
| Austria | Present | — |
| Belgium | Present | — |
| Bulgaria | Present | — |
| Brazil | Present | — |
| Canada | Present | |
| Switzerland | Present | — |
| Chile | Present | — |
| China | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_002081965.1 | Contig | 67 | 5 | 5 | - |
|
|
|
P_cactorum_v1 |
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Transcriptomes (6 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| ERR10201696 | - | - | - | 31814017 | - | |
|
PRJEB55987 ERX9737088 ERP140908 general Illumina HiSeq 2500 sequencing; Raw reads: P8403_316 unspecified {'ena-last-update': '2022-11-26', 'ena-first-public': '2022-11-26'} |
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| ERR10201697 | - | - | - | 26941615 | - | |
|
PRJEB55987 ERX9737089 ERP140908 general Illumina HiSeq 2500 sequencing; Raw reads: P8403_317 unspecified {'ena-last-update': '2022-11-26', 'ena-first-public': '2022-11-26'} |
||||||
| ERR10201698 | - | - | - | 30927261 | - | |
|
PRJEB55987 ERX9737090 ERP140908 general Illumina HiSeq 2500 sequencing; Raw reads: P8403_318 unspecified {'ena-last-update': '2022-11-26', 'ena-first-public': '2022-11-26'} |
||||||
| SRR13872301 | - | - | - | 29900112 | - | |
|
PRJNA383548 SRX10252717 SRP139898 RNA-Seq of Phythophthora cactorum mycelium https://doi.org/10.1101/2021.02.22.432166 P414 {'host': 'Fragaria x ananassa', 'strain': 'P414', 'lat_lon': '51.2859 N 0.4533 E', 'env_medium': 'V-8 juice broth', 'misc_param': 'biological replicate 3', 'geo_loc_name': 'United Kingdom', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '2017', 'env_broad_scale': 'laboratory', 'env_local_scale': 'laboratory', 'isol_growth_condt': '20 ºC under lab light/dark cycle for 10 days'} |
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| SRR13872293 | - | - | - | 30760995 | - | |
|
PRJNA383548 SRX10252725 SRP139898 RNA-Seq of Phythophthora cactorum mycelium https://doi.org/10.1101/2021.02.22.432166 P414 {'host': 'Fragaria x ananassa', 'strain': 'P414', 'lat_lon': '51.2859 N 0.4533 E', 'env_medium': 'V-8 juice broth', 'misc_param': 'biological replicate 1', 'geo_loc_name': 'United Kingdom', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '2017', 'env_broad_scale': 'laboratory', 'env_local_scale': 'laboratory', 'isol_growth_condt': '20 ºC under lab light/dark cycle for 10 days'} |
||||||
| SRR13872292 | - | - | - | 29543391 | - | |
|
PRJNA383548 SRX10252726 SRP139898 RNA-Seq of Phythophthora cactorum mycelium https://doi.org/10.1101/2021.02.22.432166 P414 {'host': 'Fragaria x ananassa', 'strain': 'P414', 'lat_lon': '51.2859 N 0.4533 E', 'env_medium': 'V-8 juice broth', 'misc_param': 'biological replicate 2', 'geo_loc_name': 'United Kingdom', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '2017', 'env_broad_scale': 'laboratory', 'env_local_scale': 'laboratory', 'isol_growth_condt': '20 ºC under lab light/dark cycle for 10 days'} |
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Literature
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