Pepper mild mottle virus
TaxID: 12239
Basic Information
Pepper mild mottle virus
Pepper Mild Mottle Virus
Pepper mild mottle virus (PMMoV) is a plant pathogenic virus that occurs worldwide on species of field grown bell, hot and ornamental pepper species. It is caused by members of the plant virus genus Tobamovirus—otherwise known as the tobacco mosaic virus family. Tobamovirus are viruses that contain positive sense RNA genomes that infect plants. Symptoms of the disease vary depending on the cultivar. Typical symptoms include the chlorosis of leaves, stunting, and distorted and lumpy fruiting structures. The virus is spread by mechanical transmission and infected seeds. Avoidance is the best means of controlling the disease because once a plant is infected it cannot be treated. Only seeds that have been tested and treated for the pathogen should be planted.
from Wikipedia
Taxonomic Information
unclassified
Kitrinoviricota
Alsuviricetes
Martellivirales
Virgaviridae
Tobamovirus
Tobamovirus capsici
nan
No Rank
nan
k__unclassified;p__Kitrinoviricota;c__Alsuviricetes;o__Martellivirales;f__Virgaviridae;g__Tobamovirus;s__Tobamovirus capsici
nan
Viruses/Viroids
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (10 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Burkina Faso | Present | — |
| Costa Rica | Absent | — |
| Dominican Republic | Quarantine pests | — |
| Ecuador | Quarantine pests | — |
| Guatemala | Absent | — |
| Mauritius | Quarantine pests | — |
| New Caledonia | Quarantine pests | — |
| Nicaragua | Absent | — |
| Paraguay | Quarantine pests | — |
| Sudan | Quarantine pests | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000859645.1 | Complete Genome | - | 6 | 6 | - |
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ViralProj15148 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR22959542 | - | - | - | 22590326 | Mexico | |
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PRJNA886712 SRX18916238 SRP415605 virus RNA-Seq of water Random amplification of nucleic acids was carried out using SuperScript III reverse transcriptase (Invitrogen, USA) and primer-A (5'-GTTTCCCAGTAGGTCTCNNNNNNNNN-3'). Double stranded DNA was generated by two rounds of synthesis with Sequenase 2.0 (USB, USA), followed by amplification with Phusion DNA polymerase using primer-B (5'-GTTTCCCAGTAGGTCTC-3') Sludge {'host': 'Plant', 'isolate': 'Sludge', 'geo_loc_name': 'Mexico', 'biosamplemodel': 'Viral', 'collection_date': '2021-01-15', 'isolation_source': 'Sludge Wastewater Treatment Plant'} |
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| SRR22959541 | - | - | - | 24576310 | Mexico | |
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PRJNA886712 SRX18916239 SRP415605 virus RNA-Seq of water Random amplification of nucleic acids was carried out using SuperScript III reverse transcriptase (Invitrogen, USA) and primer-A (5'-GTTTCCCAGTAGGTCTCNNNNNNNNN-3'). Double stranded DNA was generated by two rounds of synthesis with Sequenase 2.0 (USB, USA), followed by amplification with Phusion DNA polymerase using primer-B (5'-GTTTCCCAGTAGGTCTC-3') Sludge {'host': 'Plant', 'isolate': 'Sludge', 'geo_loc_name': 'Mexico', 'biosamplemodel': 'Viral', 'collection_date': '2021-01-15', 'isolation_source': 'Sludge Wastewater Treatment Plant'} |
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| SRR22959540 | - | - | - | 6132105 | Mexico | |
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PRJNA886712 SRX18916240 SRP415605 virus RNA-Seq of water Random amplification of nucleic acids was carried out using SuperScript III reverse transcriptase (Invitrogen, USA) and primer-A (5'-GTTTCCCAGTAGGTCTCNNNNNNNNN-3'). Double stranded DNA was generated by two rounds of synthesis with Sequenase 2.0 (USB, USA), followed by amplification with Phusion DNA polymerase using primer-B (5'-GTTTCCCAGTAGGTCTC-3') Water {'host': 'Plant', 'depth': 'esterilized', 'isolate': 'Water', 'lat_lon': '14.53 N 92.17 W', 'geo_loc_name': 'Mexico', 'biosamplemodel': 'Viral', 'collection_date': '2021-01-15', 'env_broad_scale': 'Tropical', 'isolation_source': 'Water esterilized control'} |
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Literature
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